Hb_000395_080

Information

Type -
Description -
Location Contig395: 116335-119066
Sequence    

Annotation

kegg
ID rcu:RCOM_1313130
description hypothetical protein
nr
ID XP_012086593.1
description PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20352 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39502: 112156-115524 , PASA_asmbl_39503: 110497-115523 , PASA_asmbl_39505: 116337-119031
cDNA
(Sanger)
(ID:Location)		 039_I05.ab1: 116337-118658 , 043_I24.ab1: 118911-119011

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_080 0.0 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
2 Hb_011828_020 0.0782282729 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
3 Hb_000877_060 0.0892425278 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
4 Hb_001477_130 0.0924833571 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
5 Hb_000696_340 0.0963895406 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
6 Hb_002137_020 0.0979173995 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_005215_030 0.0979978554 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
8 Hb_005056_060 0.1004658661 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
9 Hb_005329_020 0.1015190575 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
10 Hb_007254_040 0.104973357 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
11 Hb_009158_030 0.106964012 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
12 Hb_002232_170 0.1100960479 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
13 Hb_012022_030 0.1108702173 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
14 Hb_000003_480 0.1119817128 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
15 Hb_011689_040 0.1122771133 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
16 Hb_005539_030 0.1125166098 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
17 Hb_000522_080 0.1127296073 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
18 Hb_022092_120 0.112983524 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
19 Hb_000923_050 0.1130056282 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
20 Hb_002263_010 0.1131360227 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]

Gene co-expression network

sample Hb_000395_080 Hb_000395_080 Hb_011828_020 Hb_011828_020 Hb_000395_080--Hb_011828_020 Hb_000877_060 Hb_000877_060 Hb_000395_080--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_000395_080--Hb_001477_130 Hb_000696_340 Hb_000696_340 Hb_000395_080--Hb_000696_340 Hb_002137_020 Hb_002137_020 Hb_000395_080--Hb_002137_020 Hb_005215_030 Hb_005215_030 Hb_000395_080--Hb_005215_030 Hb_011828_020--Hb_000877_060 Hb_011828_020--Hb_001477_130 Hb_003020_230 Hb_003020_230 Hb_011828_020--Hb_003020_230 Hb_000613_140 Hb_000613_140 Hb_011828_020--Hb_000613_140 Hb_000923_050 Hb_000923_050 Hb_011828_020--Hb_000923_050 Hb_004221_010 Hb_004221_010 Hb_000877_060--Hb_004221_010 Hb_012022_030 Hb_012022_030 Hb_000877_060--Hb_012022_030 Hb_001248_050 Hb_001248_050 Hb_000877_060--Hb_001248_050 Hb_000720_120 Hb_000720_120 Hb_000877_060--Hb_000720_120 Hb_002762_060 Hb_002762_060 Hb_000877_060--Hb_002762_060 Hb_004223_280 Hb_004223_280 Hb_001477_130--Hb_004223_280 Hb_002685_170 Hb_002685_170 Hb_001477_130--Hb_002685_170 Hb_001477_130--Hb_002137_020 Hb_001477_130--Hb_000720_120 Hb_005357_030 Hb_005357_030 Hb_001477_130--Hb_005357_030 Hb_000221_210 Hb_000221_210 Hb_000696_340--Hb_000221_210 Hb_000696_340--Hb_002137_020 Hb_005329_020 Hb_005329_020 Hb_000696_340--Hb_005329_020 Hb_000329_630 Hb_000329_630 Hb_000696_340--Hb_000329_630 Hb_000696_340--Hb_004223_280 Hb_000696_340--Hb_012022_030 Hb_002137_020--Hb_004223_280 Hb_007441_230 Hb_007441_230 Hb_002137_020--Hb_007441_230 Hb_000571_120 Hb_000571_120 Hb_002137_020--Hb_000571_120 Hb_002137_020--Hb_012022_030 Hb_003464_060 Hb_003464_060 Hb_002137_020--Hb_003464_060 Hb_002016_110 Hb_002016_110 Hb_002137_020--Hb_002016_110 Hb_000483_360 Hb_000483_360 Hb_005215_030--Hb_000483_360 Hb_011689_040 Hb_011689_040 Hb_005215_030--Hb_011689_040 Hb_005539_030 Hb_005539_030 Hb_005215_030--Hb_005539_030 Hb_000556_020 Hb_000556_020 Hb_005215_030--Hb_000556_020 Hb_003728_030 Hb_003728_030 Hb_005215_030--Hb_003728_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.7573 51.8438 10.0242 21.5604 52.791 97.1636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
141.346 71.7056 58.3591 55.7412 17.2059

CAGE analysis