Hb_000395_100

Information

Type -
Description -
Location Contig395: 121025-123794
Sequence    

Annotation

kegg
ID rcu:RCOM_1313110
description Protein MYG1, putative
nr
ID XP_002518897.1
description Protein MYG1, putative [Ricinus communis]
swissprot
ID Q9JK81
description UPF0160 protein MYG1, mitochondrial OS=Mus musculus GN=Myg1 PE=1 SV=1
trembl
ID B9RYS8
description Protein MYG1, putative OS=Ricinus communis GN=RCOM_1313110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_100 0.0 - - Protein MYG1, putative [Ricinus communis]
2 Hb_158990_010 0.208124997 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_001178_120 0.212616406 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
4 Hb_004466_010 0.2380805625 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
5 Hb_000094_390 0.248342222 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
6 Hb_011639_070 0.2542378045 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]
7 Hb_019654_120 0.2582052712 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
8 Hb_000879_050 0.2598628443 - - PREDICTED: uncharacterized protein LOC105107600 [Populus euphratica]
9 Hb_178389_010 0.2708859805 - - PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
10 Hb_001691_050 0.2720407194 - - -
11 Hb_002498_200 0.2746463271 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
12 Hb_000153_020 0.2750043989 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005539_320 0.2792962069 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
14 Hb_003534_040 0.2818484186 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
15 Hb_027998_030 0.2907065516 - - laccase, putative [Ricinus communis]
16 Hb_008071_030 0.2975091288 - - -
17 Hb_000926_220 0.3011515525 - - -
18 Hb_017836_010 0.3027183965 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
19 Hb_003607_030 0.3033587183 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
20 Hb_009693_040 0.3052838164 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]

Gene co-expression network

sample Hb_000395_100 Hb_000395_100 Hb_158990_010 Hb_158990_010 Hb_000395_100--Hb_158990_010 Hb_001178_120 Hb_001178_120 Hb_000395_100--Hb_001178_120 Hb_004466_010 Hb_004466_010 Hb_000395_100--Hb_004466_010 Hb_000094_390 Hb_000094_390 Hb_000395_100--Hb_000094_390 Hb_011639_070 Hb_011639_070 Hb_000395_100--Hb_011639_070 Hb_019654_120 Hb_019654_120 Hb_000395_100--Hb_019654_120 Hb_158990_010--Hb_001178_120 Hb_158990_010--Hb_000094_390 Hb_000153_020 Hb_000153_020 Hb_158990_010--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_158990_010--Hb_000153_040 Hb_009693_040 Hb_009693_040 Hb_158990_010--Hb_009693_040 Hb_001178_120--Hb_000153_020 Hb_001178_120--Hb_000094_390 Hb_005539_320 Hb_005539_320 Hb_001178_120--Hb_005539_320 Hb_177627_010 Hb_177627_010 Hb_001178_120--Hb_177627_010 Hb_132629_010 Hb_132629_010 Hb_001178_120--Hb_132629_010 Hb_008071_030 Hb_008071_030 Hb_004466_010--Hb_008071_030 Hb_095413_040 Hb_095413_040 Hb_004466_010--Hb_095413_040 Hb_017836_010 Hb_017836_010 Hb_004466_010--Hb_017836_010 Hb_000926_220 Hb_000926_220 Hb_004466_010--Hb_000926_220 Hb_049438_010 Hb_049438_010 Hb_004466_010--Hb_049438_010 Hb_000094_390--Hb_000153_020 Hb_001892_160 Hb_001892_160 Hb_000094_390--Hb_001892_160 Hb_000094_390--Hb_005539_320 Hb_000094_390--Hb_177627_010 Hb_011639_070--Hb_000094_390 Hb_001691_050 Hb_001691_050 Hb_011639_070--Hb_001691_050 Hb_040506_010 Hb_040506_010 Hb_011639_070--Hb_040506_010 Hb_000028_630 Hb_000028_630 Hb_011639_070--Hb_000028_630 Hb_001903_080 Hb_001903_080 Hb_011639_070--Hb_001903_080 Hb_000733_040 Hb_000733_040 Hb_011639_070--Hb_000733_040 Hb_178389_010 Hb_178389_010 Hb_019654_120--Hb_178389_010 Hb_122567_010 Hb_122567_010 Hb_019654_120--Hb_122567_010 Hb_123104_010 Hb_123104_010 Hb_019654_120--Hb_123104_010 Hb_017111_010 Hb_017111_010 Hb_019654_120--Hb_017111_010 Hb_007467_020 Hb_007467_020 Hb_019654_120--Hb_007467_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.16655 0 0 0 0.0555506 0.0244409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0202072 0

CAGE analysis