Hb_000395_160

Information

Type -
Description -
Location Contig395: 181308-184905
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25490g
description POPTRDRAFT_561749; hypothetical protein
nr
ID XP_002309543.1
description hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
swissprot
ID Q8LIY8
description Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic OS=Oryza sativa subsp. japonica GN=CCD8B PE=1 SV=1
trembl
ID B9H8Z1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25490g PE=4 SV=1
Gene Ontology
ID GO:0009570
description carotenoid cleavage dioxygenase 8 homolog chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_160 0.0 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
2 Hb_000979_270 0.0562594479 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
3 Hb_005687_020 0.0615112256 - - P66 protein [Hevea brasiliensis]
4 Hb_000004_150 0.065082422 - - hypothetical protein RCOM_1382630 [Ricinus communis]
5 Hb_000007_170 0.065082422 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
6 Hb_000010_280 0.065082422 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
7 Hb_000022_220 0.065082422 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
8 Hb_000045_120 0.065082422 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
9 Hb_000056_320 0.065082422 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
10 Hb_000066_110 0.065082422 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01370 [Jatropha curcas]
11 Hb_000072_270 0.065082422 - - JHL22C18.10 [Jatropha curcas]
12 Hb_000078_110 0.065082422 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
13 Hb_000081_190 0.065082422 - - -
14 Hb_000082_030 0.065082422 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105164525 [Sesamum indicum]
15 Hb_000085_430 0.065082422 - - -
16 Hb_000092_110 0.065082422 - - catalytic, putative [Ricinus communis]
17 Hb_000093_120 0.065082422 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_000120_110 0.065082422 - - 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase, putative [Ricinus communis]
19 Hb_000125_160 0.065082422 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000127_060 0.065082422 - - -

Gene co-expression network

sample Hb_000395_160 Hb_000395_160 Hb_000979_270 Hb_000979_270 Hb_000395_160--Hb_000979_270 Hb_005687_020 Hb_005687_020 Hb_000395_160--Hb_005687_020 Hb_000004_150 Hb_000004_150 Hb_000395_160--Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_000395_160--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_000395_160--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_000395_160--Hb_000022_220 Hb_005050_010 Hb_005050_010 Hb_000979_270--Hb_005050_010 Hb_000979_270--Hb_000004_150 Hb_000979_270--Hb_000007_170 Hb_000979_270--Hb_000010_280 Hb_000979_270--Hb_000022_220 Hb_000045_120 Hb_000045_120 Hb_000979_270--Hb_000045_120 Hb_163950_060 Hb_163950_060 Hb_005687_020--Hb_163950_060 Hb_011980_020 Hb_011980_020 Hb_005687_020--Hb_011980_020 Hb_004096_040 Hb_004096_040 Hb_005687_020--Hb_004096_040 Hb_186671_020 Hb_186671_020 Hb_005687_020--Hb_186671_020 Hb_001796_010 Hb_001796_010 Hb_005687_020--Hb_001796_010 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000056_320 Hb_000056_320 Hb_000004_150--Hb_000056_320 Hb_000066_110 Hb_000066_110 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0244575 31.7447 0.0181805 0.0657317 0.0809545 0.0723333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00872937 0

CAGE analysis