Hb_000395_170

Information

Type -
Description -
Location Contig395: 186349-190768
Sequence    

Annotation

kegg
ID rcu:RCOM_0799840
description hypothetical protein
nr
ID XP_012077360.1
description PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
swissprot
ID O82314
description Probable transcriptional regulatory protein At2g25830 OS=Arabidopsis thaliana GN=At2g25830 PE=2 SV=2
trembl
ID A0A067KDF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07723 PE=3 SV=1
Gene Ontology
ID GO:0009507
description probable transcriptional regulatory protein at2g25830

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39517: 186364-189153 , PASA_asmbl_39518: 189314-190495 , PASA_asmbl_39519: 190954-193488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_170 0.0 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
2 Hb_003175_010 0.0629940659 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
3 Hb_000926_280 0.0639637762 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
4 Hb_148912_010 0.0669971484 - - conserved hypothetical protein [Ricinus communis]
5 Hb_048937_040 0.0686643628 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
6 Hb_000089_220 0.0687912662 - - PREDICTED: protein FAM133-like [Populus euphratica]
7 Hb_004109_090 0.0713499431 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_002391_300 0.0714546509 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
9 Hb_002506_020 0.0723283042 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
10 Hb_005754_060 0.0738956051 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000170_210 0.075548951 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_003766_040 0.0761235395 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_168000_010 0.0769620301 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
14 Hb_003929_160 0.0775656272 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
15 Hb_003728_080 0.0786105424 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
16 Hb_003001_120 0.0791184052 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
17 Hb_007951_060 0.0795387857 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_003001_140 0.0795754416 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
19 Hb_009557_070 0.0810426919 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007317_210 0.0819341466 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]

Gene co-expression network

sample Hb_000395_170 Hb_000395_170 Hb_003175_010 Hb_003175_010 Hb_000395_170--Hb_003175_010 Hb_000926_280 Hb_000926_280 Hb_000395_170--Hb_000926_280 Hb_148912_010 Hb_148912_010 Hb_000395_170--Hb_148912_010 Hb_048937_040 Hb_048937_040 Hb_000395_170--Hb_048937_040 Hb_000089_220 Hb_000089_220 Hb_000395_170--Hb_000089_220 Hb_004109_090 Hb_004109_090 Hb_000395_170--Hb_004109_090 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_003175_010--Hb_048937_040 Hb_000926_280--Hb_000030_300 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_002391_300 Hb_002391_300 Hb_000926_280--Hb_002391_300 Hb_000327_120 Hb_000327_120 Hb_000926_280--Hb_000327_120 Hb_003038_030 Hb_003038_030 Hb_148912_010--Hb_003038_030 Hb_000172_370 Hb_000172_370 Hb_148912_010--Hb_000172_370 Hb_002411_170 Hb_002411_170 Hb_148912_010--Hb_002411_170 Hb_063716_050 Hb_063716_050 Hb_148912_010--Hb_063716_050 Hb_125000_010 Hb_125000_010 Hb_148912_010--Hb_125000_010 Hb_010457_030 Hb_010457_030 Hb_048937_040--Hb_010457_030 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_000010_330 Hb_000010_330 Hb_048937_040--Hb_000010_330 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_006185_050 Hb_006185_050 Hb_000089_220--Hb_006185_050 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000089_220--Hb_000926_280 Hb_004109_090--Hb_003175_010 Hb_003929_160 Hb_003929_160 Hb_004109_090--Hb_003929_160 Hb_000409_020 Hb_000409_020 Hb_004109_090--Hb_000409_020 Hb_004109_090--Hb_004724_200 Hb_001818_090 Hb_001818_090 Hb_004109_090--Hb_001818_090 Hb_005663_060 Hb_005663_060 Hb_004109_090--Hb_005663_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5457 3.59798 7.00748 5.63865 12.5382 17.8123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.35638 12.9657 12.5571 6.08819 4.86534

CAGE analysis