Hb_000395_190

Information

Type -
Description -
Location Contig395: 192237-193325
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25470g
description POPTRDRAFT_763341; hypothetical protein
nr
ID XP_012077361.1
description PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
swissprot
ID Q9C5D2
description F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1
trembl
ID A0A067KGM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07724 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39519: 190954-193488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_190 0.0 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
2 Hb_010128_080 0.0401022601 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
3 Hb_000260_270 0.0531243147 - - zinc finger protein, putative [Ricinus communis]
4 Hb_005731_130 0.0579370404 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
5 Hb_089032_040 0.0622186848 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
6 Hb_002078_130 0.0627036805 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
7 Hb_000099_080 0.063696812 - - kinesin light chain, putative [Ricinus communis]
8 Hb_001538_130 0.0670057714 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001341_170 0.070249971 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
10 Hb_000866_170 0.0709492273 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000035_320 0.0725061627 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
12 Hb_015934_040 0.0737790731 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
13 Hb_001198_100 0.0750573626 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
14 Hb_007416_180 0.0751423595 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
15 Hb_004545_140 0.0751689222 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
16 Hb_000185_030 0.0756982023 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
17 Hb_011485_070 0.0758409465 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
18 Hb_003761_010 0.0759292702 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_000890_210 0.0761476154 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
20 Hb_000329_470 0.0771925517 - - ccr4-not transcription complex, putative [Ricinus communis]

Gene co-expression network

sample Hb_000395_190 Hb_000395_190 Hb_010128_080 Hb_010128_080 Hb_000395_190--Hb_010128_080 Hb_000260_270 Hb_000260_270 Hb_000395_190--Hb_000260_270 Hb_005731_130 Hb_005731_130 Hb_000395_190--Hb_005731_130 Hb_089032_040 Hb_089032_040 Hb_000395_190--Hb_089032_040 Hb_002078_130 Hb_002078_130 Hb_000395_190--Hb_002078_130 Hb_000099_080 Hb_000099_080 Hb_000395_190--Hb_000099_080 Hb_015934_040 Hb_015934_040 Hb_010128_080--Hb_015934_040 Hb_010128_080--Hb_000099_080 Hb_000866_220 Hb_000866_220 Hb_010128_080--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_010128_080--Hb_000003_250 Hb_010128_080--Hb_089032_040 Hb_000260_270--Hb_005731_130 Hb_011218_040 Hb_011218_040 Hb_000260_270--Hb_011218_040 Hb_004994_220 Hb_004994_220 Hb_000260_270--Hb_004994_220 Hb_000329_470 Hb_000329_470 Hb_000260_270--Hb_000329_470 Hb_002631_060 Hb_002631_060 Hb_000260_270--Hb_002631_060 Hb_005731_130--Hb_010128_080 Hb_000061_460 Hb_000061_460 Hb_005731_130--Hb_000061_460 Hb_005731_130--Hb_089032_040 Hb_001143_160 Hb_001143_160 Hb_005731_130--Hb_001143_160 Hb_002217_300 Hb_002217_300 Hb_089032_040--Hb_002217_300 Hb_089032_040--Hb_000061_460 Hb_000676_110 Hb_000676_110 Hb_089032_040--Hb_000676_110 Hb_002078_130--Hb_000329_470 Hb_003761_010 Hb_003761_010 Hb_002078_130--Hb_003761_010 Hb_001369_730 Hb_001369_730 Hb_002078_130--Hb_001369_730 Hb_002078_130--Hb_000099_080 Hb_002078_130--Hb_000260_270 Hb_007691_030 Hb_007691_030 Hb_000099_080--Hb_007691_030 Hb_010712_030 Hb_010712_030 Hb_000099_080--Hb_010712_030 Hb_031527_040 Hb_031527_040 Hb_000099_080--Hb_031527_040 Hb_000563_320 Hb_000563_320 Hb_000099_080--Hb_000563_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.69187 8.68827 3.06737 7.72721 8.37873 8.83952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.25712 9.32939 11.4867 8.3099 5.38967

CAGE analysis