Hb_000395_220

Information

Type -
Description -
Location Contig395: 214320-217369
Sequence    

Annotation

kegg
ID rcu:RCOM_0799870
description Protein pim1, putative
nr
ID XP_012077366.1
description PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
swissprot
ID Q6NXM2
description RCC1 and BTB domain-containing protein 1 OS=Mus musculus GN=Rcbtb1 PE=2 SV=1
trembl
ID B9RRY8
description Protein pim1, putative OS=Ricinus communis GN=RCOM_0799870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39525: 217075-217298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_220 0.0 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
2 Hb_007426_140 0.0648711933 - - ornithine aminotransferase, putative [Ricinus communis]
3 Hb_083799_010 0.0729443539 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_009732_020 0.0830918341 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
5 Hb_001780_150 0.0885657633 - - ceramidase, putative [Ricinus communis]
6 Hb_002272_170 0.0915479545 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
7 Hb_011287_010 0.0918729247 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_002217_220 0.0922202974 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
9 Hb_075315_010 0.0942206587 - - ornithine aminotransferase [Camellia sinensis]
10 Hb_001322_180 0.0951310869 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
11 Hb_006829_100 0.0961099312 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003849_240 0.097444813 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_000009_120 0.1011471561 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
14 Hb_007765_030 0.1027579341 - - PREDICTED: neutral ceramidase [Jatropha curcas]
15 Hb_003906_170 0.1038516922 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_000260_660 0.1039662034 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005081_020 0.1053265811 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
18 Hb_000227_040 0.1084185841 - - Stem-specific protein TSJT1, putative [Ricinus communis]
19 Hb_002836_100 0.1090327728 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
20 Hb_005489_140 0.111471867 - - PREDICTED: maspardin [Jatropha curcas]

Gene co-expression network

sample Hb_000395_220 Hb_000395_220 Hb_007426_140 Hb_007426_140 Hb_000395_220--Hb_007426_140 Hb_083799_010 Hb_083799_010 Hb_000395_220--Hb_083799_010 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_001780_150 Hb_001780_150 Hb_000395_220--Hb_001780_150 Hb_002272_170 Hb_002272_170 Hb_000395_220--Hb_002272_170 Hb_011287_010 Hb_011287_010 Hb_000395_220--Hb_011287_010 Hb_007426_140--Hb_083799_010 Hb_002836_100 Hb_002836_100 Hb_007426_140--Hb_002836_100 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_075315_010 Hb_075315_010 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240 Hb_083799_010--Hb_002272_170 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_000227_040 Hb_000227_040 Hb_009732_020--Hb_000227_040 Hb_003906_170 Hb_003906_170 Hb_009732_020--Hb_003906_170 Hb_006717_070 Hb_006717_070 Hb_009732_020--Hb_006717_070 Hb_005333_050 Hb_005333_050 Hb_009732_020--Hb_005333_050 Hb_009732_020--Hb_003849_240 Hb_001780_150--Hb_011287_010 Hb_001780_150--Hb_075315_010 Hb_001780_150--Hb_007426_140 Hb_002851_010 Hb_002851_010 Hb_001780_150--Hb_002851_010 Hb_001780_150--Hb_000227_040 Hb_000251_040 Hb_000251_040 Hb_002272_170--Hb_000251_040 Hb_000692_160 Hb_000692_160 Hb_002272_170--Hb_000692_160 Hb_033772_070 Hb_033772_070 Hb_002272_170--Hb_033772_070 Hb_002272_170--Hb_007426_140 Hb_002217_220 Hb_002217_220 Hb_011287_010--Hb_002217_220 Hb_011287_010--Hb_000227_040 Hb_011287_010--Hb_000260_660 Hb_001642_070 Hb_001642_070 Hb_011287_010--Hb_001642_070 Hb_012760_040 Hb_012760_040 Hb_011287_010--Hb_012760_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16563 6.24846 2.71164 4.96708 2.61053 2.8316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03852 1.61976 1.61483 10.8255 2.53351

CAGE analysis