Hb_000395_280

Information

Type -
Description -
Location Contig395: 268391-272479
Sequence    

Annotation

kegg
ID vvi:100254144
description thioredoxin-related transmembrane protein 2
nr
ID XP_002281160.2
description PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
swissprot
ID Q6DFS0
description Thioredoxin-related transmembrane protein 2 OS=Xenopus tropicalis GN=tmx2 PE=2 SV=1
trembl
ID F6H3C9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39531: 268432-272793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_280 0.0 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
2 Hb_003605_020 0.0694890668 - - exocyst complex component sec6, putative [Ricinus communis]
3 Hb_005754_040 0.0708646219 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
4 Hb_065968_010 0.0742276136 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
5 Hb_001957_010 0.0801128622 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
6 Hb_002552_040 0.0819516477 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
7 Hb_001227_120 0.0828812446 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
8 Hb_019654_020 0.0829175018 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
9 Hb_159809_070 0.0831200724 - - phospholipase A-2-activating protein, putative [Ricinus communis]
10 Hb_001507_120 0.0831798047 - - transcription factor, putative [Ricinus communis]
11 Hb_001633_200 0.083334229 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
12 Hb_000072_300 0.0869932288 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
13 Hb_002676_120 0.0911812927 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
14 Hb_000078_140 0.0937786049 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
15 Hb_003998_040 0.0959185491 - - organic anion transporter, putative [Ricinus communis]
16 Hb_001633_080 0.096633309 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
17 Hb_003058_100 0.0977592931 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
18 Hb_000815_300 0.0980532176 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
19 Hb_004228_120 0.0985160493 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
20 Hb_002686_200 0.0992960514 - - glucosidase II beta subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000395_280 Hb_000395_280 Hb_003605_020 Hb_003605_020 Hb_000395_280--Hb_003605_020 Hb_005754_040 Hb_005754_040 Hb_000395_280--Hb_005754_040 Hb_065968_010 Hb_065968_010 Hb_000395_280--Hb_065968_010 Hb_001957_010 Hb_001957_010 Hb_000395_280--Hb_001957_010 Hb_002552_040 Hb_002552_040 Hb_000395_280--Hb_002552_040 Hb_001227_120 Hb_001227_120 Hb_000395_280--Hb_001227_120 Hb_003605_020--Hb_065968_010 Hb_003605_020--Hb_001957_010 Hb_000174_260 Hb_000174_260 Hb_003605_020--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_003605_020--Hb_001269_130 Hb_019654_020 Hb_019654_020 Hb_003605_020--Hb_019654_020 Hb_005754_040--Hb_003605_020 Hb_002676_120 Hb_002676_120 Hb_005754_040--Hb_002676_120 Hb_006775_120 Hb_006775_120 Hb_005754_040--Hb_006775_120 Hb_000072_300 Hb_000072_300 Hb_005754_040--Hb_000072_300 Hb_000684_030 Hb_000684_030 Hb_005754_040--Hb_000684_030 Hb_002686_200 Hb_002686_200 Hb_065968_010--Hb_002686_200 Hb_159809_070 Hb_159809_070 Hb_065968_010--Hb_159809_070 Hb_065968_010--Hb_002552_040 Hb_074197_040 Hb_074197_040 Hb_065968_010--Hb_074197_040 Hb_065968_010--Hb_001957_010 Hb_000197_190 Hb_000197_190 Hb_001957_010--Hb_000197_190 Hb_001507_120 Hb_001507_120 Hb_001957_010--Hb_001507_120 Hb_003994_030 Hb_003994_030 Hb_001957_010--Hb_003994_030 Hb_000815_300 Hb_000815_300 Hb_002552_040--Hb_000815_300 Hb_002687_180 Hb_002687_180 Hb_002552_040--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_002552_040--Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_002552_040--Hb_001279_190 Hb_006970_020 Hb_006970_020 Hb_002552_040--Hb_006970_020 Hb_001227_120--Hb_159809_070 Hb_001227_120--Hb_001279_190 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_001227_120--Hb_023313_040 Hb_000702_090 Hb_000702_090 Hb_001227_120--Hb_000702_090 Hb_081599_010 Hb_081599_010 Hb_001227_120--Hb_081599_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.42757 4.03837 17.6224 18.5732 5.32134 7.47825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.10132 6.092 6.8951 12.3949 13.1953

CAGE analysis