Hb_000395_290

Information

Type transcription factor
Description TF Family: HB
Location Contig395: 281231-288505
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25390g
description POPTRDRAFT_832118; class III HD-Zip family protein
nr
ID XP_012077376.1
description PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
swissprot
ID Q39123
description Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1
trembl
ID A0A067KD60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07732 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39532: 280944-281325 , PASA_asmbl_39533: 281774-288244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_290 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
2 Hb_000141_040 0.079391273 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
3 Hb_017469_020 0.0802222304 - - -
4 Hb_002868_010 0.0883353219 - - 60S ribosomal protein L30, putative [Ricinus communis]
5 Hb_004453_170 0.0883741614 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
6 Hb_000096_170 0.0939400523 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
7 Hb_002234_140 0.096288794 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
8 Hb_000120_330 0.0967263241 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000127_180 0.097038794 - - 40S ribosomal protein S18, putative [Ricinus communis]
10 Hb_021419_020 0.0973439654 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
11 Hb_028841_030 0.0985884616 - - -
12 Hb_000260_550 0.099263585 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
13 Hb_145880_030 0.0996046303 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
14 Hb_008112_040 0.100768145 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
15 Hb_001832_060 0.1008348301 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
16 Hb_000236_390 0.1023080567 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
17 Hb_000698_030 0.1030637205 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
18 Hb_011381_060 0.1032644593 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
19 Hb_000462_130 0.1034798704 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
20 Hb_000139_350 0.1042923519 - - AtGCP3 interacting protein 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000395_290 Hb_000395_290 Hb_000141_040 Hb_000141_040 Hb_000395_290--Hb_000141_040 Hb_017469_020 Hb_017469_020 Hb_000395_290--Hb_017469_020 Hb_002868_010 Hb_002868_010 Hb_000395_290--Hb_002868_010 Hb_004453_170 Hb_004453_170 Hb_000395_290--Hb_004453_170 Hb_000096_170 Hb_000096_170 Hb_000395_290--Hb_000096_170 Hb_002234_140 Hb_002234_140 Hb_000395_290--Hb_002234_140 Hb_145880_030 Hb_145880_030 Hb_000141_040--Hb_145880_030 Hb_002007_060 Hb_002007_060 Hb_000141_040--Hb_002007_060 Hb_003363_110 Hb_003363_110 Hb_000141_040--Hb_003363_110 Hb_000866_270 Hb_000866_270 Hb_000141_040--Hb_000866_270 Hb_003078_040 Hb_003078_040 Hb_000141_040--Hb_003078_040 Hb_000000_160 Hb_000000_160 Hb_017469_020--Hb_000000_160 Hb_017469_020--Hb_002868_010 Hb_000649_320 Hb_000649_320 Hb_017469_020--Hb_000649_320 Hb_017469_020--Hb_002007_060 Hb_001898_230 Hb_001898_230 Hb_017469_020--Hb_001898_230 Hb_003939_080 Hb_003939_080 Hb_002868_010--Hb_003939_080 Hb_001946_210 Hb_001946_210 Hb_002868_010--Hb_001946_210 Hb_002868_010--Hb_002007_060 Hb_002868_010--Hb_000000_160 Hb_011360_140 Hb_011360_140 Hb_002868_010--Hb_011360_140 Hb_001512_070 Hb_001512_070 Hb_002868_010--Hb_001512_070 Hb_001832_060 Hb_001832_060 Hb_004453_170--Hb_001832_060 Hb_001195_480 Hb_001195_480 Hb_004453_170--Hb_001195_480 Hb_000462_130 Hb_000462_130 Hb_004453_170--Hb_000462_130 Hb_000260_550 Hb_000260_550 Hb_004453_170--Hb_000260_550 Hb_001123_130 Hb_001123_130 Hb_004453_170--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_004453_170--Hb_000527_060 Hb_000096_170--Hb_000260_550 Hb_007044_130 Hb_007044_130 Hb_000096_170--Hb_007044_130 Hb_022425_040 Hb_022425_040 Hb_000096_170--Hb_022425_040 Hb_004223_040 Hb_004223_040 Hb_000096_170--Hb_004223_040 Hb_002232_040 Hb_002232_040 Hb_000096_170--Hb_002232_040 Hb_001504_020 Hb_001504_020 Hb_002234_140--Hb_001504_020 Hb_021576_040 Hb_021576_040 Hb_002234_140--Hb_021576_040 Hb_000444_080 Hb_000444_080 Hb_002234_140--Hb_000444_080 Hb_000563_230 Hb_000563_230 Hb_002234_140--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_002234_140--Hb_003935_020 Hb_000009_530 Hb_000009_530 Hb_002234_140--Hb_000009_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0076 10.8636 12.7057 8.44927 11.261 10.8713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1698 30.6861 9.17526 4.73302 4.50791

CAGE analysis