Hb_000397_060

Information

Type -
Description -
Location Contig397: 150986-151780
Sequence    

Annotation

kegg
ID rcu:RCOM_1371750
description hypothetical protein
nr
ID XP_012081132.1
description PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K279
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16984 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000397_060 0.0 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
2 Hb_001958_040 0.0524760321 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
3 Hb_000073_040 0.0609905883 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
4 Hb_005357_140 0.071496313 - - Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]
5 Hb_072952_010 0.0798884427 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
6 Hb_000010_320 0.0800836157 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
7 Hb_001301_310 0.0802040337 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004007_050 0.0808344444 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
9 Hb_002045_160 0.0852990302 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
10 Hb_000258_400 0.0885198697 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
11 Hb_061336_010 0.0889996983 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007576_090 0.0894258457 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
13 Hb_049846_010 0.090214925 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
14 Hb_000816_180 0.0917710865 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
15 Hb_180535_010 0.0932209389 - - -
16 Hb_028486_020 0.0935495782 - - conserved hypothetical protein [Ricinus communis]
17 Hb_059832_010 0.0937541477 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
18 Hb_000139_040 0.0947106269 - - spermine synthase, putative [Ricinus communis]
19 Hb_004453_160 0.096655292 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000375_100 0.098307978 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]

Gene co-expression network

sample Hb_000397_060 Hb_000397_060 Hb_001958_040 Hb_001958_040 Hb_000397_060--Hb_001958_040 Hb_000073_040 Hb_000073_040 Hb_000397_060--Hb_000073_040 Hb_005357_140 Hb_005357_140 Hb_000397_060--Hb_005357_140 Hb_072952_010 Hb_072952_010 Hb_000397_060--Hb_072952_010 Hb_000010_320 Hb_000010_320 Hb_000397_060--Hb_000010_320 Hb_001301_310 Hb_001301_310 Hb_000397_060--Hb_001301_310 Hb_001958_040--Hb_000073_040 Hb_004007_050 Hb_004007_050 Hb_001958_040--Hb_004007_050 Hb_001958_040--Hb_001301_310 Hb_004128_150 Hb_004128_150 Hb_001958_040--Hb_004128_150 Hb_019516_010 Hb_019516_010 Hb_001958_040--Hb_019516_010 Hb_000258_400 Hb_000258_400 Hb_000073_040--Hb_000258_400 Hb_000073_040--Hb_072952_010 Hb_072620_010 Hb_072620_010 Hb_000073_040--Hb_072620_010 Hb_002045_160 Hb_002045_160 Hb_000073_040--Hb_002045_160 Hb_000139_040 Hb_000139_040 Hb_005357_140--Hb_000139_040 Hb_005357_140--Hb_001301_310 Hb_049846_010 Hb_049846_010 Hb_005357_140--Hb_049846_010 Hb_005357_140--Hb_001958_040 Hb_000283_090 Hb_000283_090 Hb_005357_140--Hb_000283_090 Hb_061336_010 Hb_061336_010 Hb_072952_010--Hb_061336_010 Hb_007576_090 Hb_007576_090 Hb_072952_010--Hb_007576_090 Hb_000375_100 Hb_000375_100 Hb_072952_010--Hb_000375_100 Hb_180535_010 Hb_180535_010 Hb_072952_010--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_072952_010--Hb_000816_180 Hb_072952_010--Hb_000258_400 Hb_074240_030 Hb_074240_030 Hb_000010_320--Hb_074240_030 Hb_158845_010 Hb_158845_010 Hb_000010_320--Hb_158845_010 Hb_059832_010 Hb_059832_010 Hb_000010_320--Hb_059832_010 Hb_015299_040 Hb_015299_040 Hb_000010_320--Hb_015299_040 Hb_001856_190 Hb_001856_190 Hb_000010_320--Hb_001856_190 Hb_001301_310--Hb_004128_150 Hb_002053_100 Hb_002053_100 Hb_001301_310--Hb_002053_100 Hb_001301_310--Hb_000073_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0295713 0.119473 7.20728 3.28015 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0433251 1.61014

CAGE analysis