Hb_000397_070

Information

Type -
Description -
Location Contig397: 153421-157894
Sequence    

Annotation

kegg
ID rcu:RCOM_1371760
description hypothetical protein
nr
ID XP_012081130.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067K1X7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16983 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein nuclear fusion defective 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39603: 155114-157471 , PASA_asmbl_39604: 157636-157763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000397_070 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
2 Hb_000291_280 0.1460586026 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
3 Hb_012340_010 0.1532172482 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
4 Hb_003893_170 0.164583367 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
5 Hb_000997_210 0.1686197689 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
6 Hb_010638_020 0.1769900349 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
7 Hb_000427_030 0.1820607766 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011344_010 0.1841446528 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
9 Hb_000352_110 0.1848167232 - - DNA topoisomerase II, putative [Ricinus communis]
10 Hb_003209_020 0.1867151695 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
11 Hb_073171_110 0.1892866821 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
12 Hb_000088_040 0.1898191197 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
13 Hb_005955_020 0.1900640802 - - ring finger containing protein, putative [Ricinus communis]
14 Hb_000556_080 0.1911580806 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
15 Hb_005227_070 0.1938645772 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_007575_040 0.1943108901 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
17 Hb_046703_010 0.196945797 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
18 Hb_034083_010 0.1979335029 - - conserved hypothetical protein [Ricinus communis]
19 Hb_098993_010 0.1979911175 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
20 Hb_174541_020 0.2009331561 - - PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica]

Gene co-expression network

sample Hb_000397_070 Hb_000397_070 Hb_000291_280 Hb_000291_280 Hb_000397_070--Hb_000291_280 Hb_012340_010 Hb_012340_010 Hb_000397_070--Hb_012340_010 Hb_003893_170 Hb_003893_170 Hb_000397_070--Hb_003893_170 Hb_000997_210 Hb_000997_210 Hb_000397_070--Hb_000997_210 Hb_010638_020 Hb_010638_020 Hb_000397_070--Hb_010638_020 Hb_000427_030 Hb_000427_030 Hb_000397_070--Hb_000427_030 Hb_005227_070 Hb_005227_070 Hb_000291_280--Hb_005227_070 Hb_000291_280--Hb_000427_030 Hb_098993_010 Hb_098993_010 Hb_000291_280--Hb_098993_010 Hb_000088_040 Hb_000088_040 Hb_000291_280--Hb_000088_040 Hb_022148_010 Hb_022148_010 Hb_000291_280--Hb_022148_010 Hb_127003_010 Hb_127003_010 Hb_000291_280--Hb_127003_010 Hb_073171_110 Hb_073171_110 Hb_012340_010--Hb_073171_110 Hb_182026_020 Hb_182026_020 Hb_012340_010--Hb_182026_020 Hb_000556_080 Hb_000556_080 Hb_012340_010--Hb_000556_080 Hb_012340_010--Hb_010638_020 Hb_012340_010--Hb_098993_010 Hb_003030_020 Hb_003030_020 Hb_012340_010--Hb_003030_020 Hb_008453_060 Hb_008453_060 Hb_003893_170--Hb_008453_060 Hb_003751_110 Hb_003751_110 Hb_003893_170--Hb_003751_110 Hb_004032_240 Hb_004032_240 Hb_003893_170--Hb_004032_240 Hb_001439_120 Hb_001439_120 Hb_003893_170--Hb_001439_120 Hb_000733_060 Hb_000733_060 Hb_003893_170--Hb_000733_060 Hb_008453_020 Hb_008453_020 Hb_003893_170--Hb_008453_020 Hb_007558_140 Hb_007558_140 Hb_000997_210--Hb_007558_140 Hb_153258_010 Hb_153258_010 Hb_000997_210--Hb_153258_010 Hb_000997_210--Hb_098993_010 Hb_002027_130 Hb_002027_130 Hb_000997_210--Hb_002027_130 Hb_000997_210--Hb_073171_110 Hb_002299_060 Hb_002299_060 Hb_000997_210--Hb_002299_060 Hb_007575_040 Hb_007575_040 Hb_010638_020--Hb_007575_040 Hb_010638_020--Hb_182026_020 Hb_010638_020--Hb_001439_120 Hb_000186_240 Hb_000186_240 Hb_010638_020--Hb_000186_240 Hb_011224_080 Hb_011224_080 Hb_010638_020--Hb_011224_080 Hb_010638_020--Hb_000556_080 Hb_011174_070 Hb_011174_070 Hb_000427_030--Hb_011174_070 Hb_002903_070 Hb_002903_070 Hb_000427_030--Hb_002903_070 Hb_001767_010 Hb_001767_010 Hb_000427_030--Hb_001767_010 Hb_004800_160 Hb_004800_160 Hb_000427_030--Hb_004800_160 Hb_000025_480 Hb_000025_480 Hb_000427_030--Hb_000025_480 Hb_003057_120 Hb_003057_120 Hb_000427_030--Hb_003057_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.53887 0.095882 0.289074 1.82309 8.33377 2.2117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3019 2.88654 6.35855 1.40435 0.756301

CAGE analysis