Hb_000398_020

Information

Type -
Description -
Location Contig398: 22692-35235
Sequence    

Annotation

kegg
ID rcu:RCOM_0496650
description helicase, putative
nr
ID XP_012066753.1
description PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
swissprot
ID P42285
description Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3
trembl
ID A0A067L5I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00305 PE=4 SV=1
Gene Ontology
ID GO:0005634
description superkiller viralicidic activity 2-like 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39646: 22127-24734 , PASA_asmbl_39647: 24745-30347 , PASA_asmbl_39649: 30427-34324 , PASA_asmbl_39650: 34424-35189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_020 0.0 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
2 Hb_000648_080 0.044790593 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
3 Hb_007558_070 0.0658187721 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
4 Hb_000406_230 0.0739804988 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
5 Hb_002000_070 0.0753651821 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
6 Hb_000236_400 0.0754567978 - - hypothetical protein JCGZ_01058 [Jatropha curcas]
7 Hb_004976_010 0.0758079729 - - hypothetical protein RCOM_1429110 [Ricinus communis]
8 Hb_000917_160 0.076475492 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
9 Hb_000640_310 0.0766057634 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
10 Hb_000318_120 0.0772649026 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
11 Hb_029977_040 0.0773871968 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
12 Hb_140049_040 0.0785238189 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
13 Hb_000170_150 0.08080811 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
14 Hb_000768_180 0.0813593226 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
15 Hb_023344_010 0.0820907265 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
16 Hb_002890_120 0.0825355268 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
17 Hb_000264_030 0.0833074061 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
18 Hb_005260_010 0.0839034642 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
19 Hb_000191_130 0.0842109027 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
20 Hb_001668_010 0.0842623548 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]

Gene co-expression network

sample Hb_000398_020 Hb_000398_020 Hb_000648_080 Hb_000648_080 Hb_000398_020--Hb_000648_080 Hb_007558_070 Hb_007558_070 Hb_000398_020--Hb_007558_070 Hb_000406_230 Hb_000406_230 Hb_000398_020--Hb_000406_230 Hb_002000_070 Hb_002000_070 Hb_000398_020--Hb_002000_070 Hb_000236_400 Hb_000236_400 Hb_000398_020--Hb_000236_400 Hb_004976_010 Hb_004976_010 Hb_000398_020--Hb_004976_010 Hb_140049_040 Hb_140049_040 Hb_000648_080--Hb_140049_040 Hb_000640_310 Hb_000640_310 Hb_000648_080--Hb_000640_310 Hb_002890_120 Hb_002890_120 Hb_000648_080--Hb_002890_120 Hb_000648_080--Hb_000406_230 Hb_000264_030 Hb_000264_030 Hb_000648_080--Hb_000264_030 Hb_007558_070--Hb_000406_230 Hb_000191_130 Hb_000191_130 Hb_007558_070--Hb_000191_130 Hb_023344_010 Hb_023344_010 Hb_007558_070--Hb_023344_010 Hb_000917_160 Hb_000917_160 Hb_007558_070--Hb_000917_160 Hb_000010_360 Hb_000010_360 Hb_007558_070--Hb_000010_360 Hb_000406_230--Hb_023344_010 Hb_000406_230--Hb_000010_360 Hb_000960_050 Hb_000960_050 Hb_000406_230--Hb_000960_050 Hb_000406_230--Hb_000191_130 Hb_000406_230--Hb_000917_160 Hb_029977_040 Hb_029977_040 Hb_002000_070--Hb_029977_040 Hb_001617_040 Hb_001617_040 Hb_002000_070--Hb_001617_040 Hb_000025_710 Hb_000025_710 Hb_002000_070--Hb_000025_710 Hb_000679_330 Hb_000679_330 Hb_002000_070--Hb_000679_330 Hb_000003_190 Hb_000003_190 Hb_002000_070--Hb_000003_190 Hb_000710_040 Hb_000710_040 Hb_000236_400--Hb_000710_040 Hb_000236_400--Hb_002890_120 Hb_000236_400--Hb_000648_080 Hb_000011_100 Hb_000011_100 Hb_000236_400--Hb_000011_100 Hb_003943_010 Hb_003943_010 Hb_000236_400--Hb_003943_010 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_055235_020 Hb_055235_020 Hb_004976_010--Hb_055235_020 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_007044_110 Hb_007044_110 Hb_004976_010--Hb_007044_110 Hb_001673_050 Hb_001673_050 Hb_004976_010--Hb_001673_050 Hb_001636_050 Hb_001636_050 Hb_004976_010--Hb_001636_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8852 19.5169 10.152 9.20146 14.9084 12.1661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.73493 8.13947 3.40138 12.465 11.5276

CAGE analysis