Hb_000398_030

Information

Type -
Description -
Location Contig398: 36103-36519
Sequence    

Annotation

kegg
ID rcu:RCOM_0496640
description hypothetical protein
nr
ID XP_002527837.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPB8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0496640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000270_730 0.109450824 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
3 Hb_001922_080 0.1353355477 - - Tellurite resistance protein tehA, putative [Ricinus communis]
4 Hb_001799_040 0.1448614449 - - -
5 Hb_001842_080 0.1585123779 - - -
6 Hb_000032_350 0.1663113082 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001373_100 0.1753365749 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000329_660 0.1885882779 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
9 Hb_000696_220 0.1902522384 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
10 Hb_000853_240 0.190924233 - - -
11 Hb_000544_110 0.1915358142 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
12 Hb_000316_100 0.1963323938 - - protein with unknown function [Ricinus communis]
13 Hb_089100_030 0.1995854081 - - -
14 Hb_003376_210 0.1997618647 - - -
15 Hb_010172_100 0.2022087722 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
16 Hb_001101_010 0.2024112013 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
17 Hb_001186_070 0.2076857765 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
18 Hb_000175_130 0.2086816613 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
19 Hb_005137_020 0.2091497186 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
20 Hb_183612_080 0.2102624121 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]

Gene co-expression network

sample Hb_000398_030 Hb_000398_030 Hb_000270_730 Hb_000270_730 Hb_000398_030--Hb_000270_730 Hb_001922_080 Hb_001922_080 Hb_000398_030--Hb_001922_080 Hb_001799_040 Hb_001799_040 Hb_000398_030--Hb_001799_040 Hb_001842_080 Hb_001842_080 Hb_000398_030--Hb_001842_080 Hb_000032_350 Hb_000032_350 Hb_000398_030--Hb_000032_350 Hb_001373_100 Hb_001373_100 Hb_000398_030--Hb_001373_100 Hb_000270_730--Hb_001842_080 Hb_183612_080 Hb_183612_080 Hb_000270_730--Hb_183612_080 Hb_000270_730--Hb_001922_080 Hb_000316_100 Hb_000316_100 Hb_000270_730--Hb_000316_100 Hb_027892_040 Hb_027892_040 Hb_000270_730--Hb_027892_040 Hb_001922_080--Hb_001842_080 Hb_010172_100 Hb_010172_100 Hb_001922_080--Hb_010172_100 Hb_001922_080--Hb_000316_100 Hb_000544_110 Hb_000544_110 Hb_001922_080--Hb_000544_110 Hb_001799_040--Hb_000544_110 Hb_002918_300 Hb_002918_300 Hb_001799_040--Hb_002918_300 Hb_001799_040--Hb_000032_350 Hb_007809_090 Hb_007809_090 Hb_001799_040--Hb_007809_090 Hb_001799_040--Hb_001922_080 Hb_032202_250 Hb_032202_250 Hb_001842_080--Hb_032202_250 Hb_001842_080--Hb_000316_100 Hb_001842_080--Hb_183612_080 Hb_001842_080--Hb_010172_100 Hb_000696_220 Hb_000696_220 Hb_000032_350--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_000032_350--Hb_000853_240 Hb_000963_030 Hb_000963_030 Hb_000032_350--Hb_000963_030 Hb_003198_010 Hb_003198_010 Hb_000032_350--Hb_003198_010 Hb_007943_140 Hb_007943_140 Hb_000032_350--Hb_007943_140 Hb_011689_050 Hb_011689_050 Hb_000032_350--Hb_011689_050 Hb_000329_660 Hb_000329_660 Hb_001373_100--Hb_000329_660 Hb_003226_240 Hb_003226_240 Hb_001373_100--Hb_003226_240 Hb_001373_100--Hb_001842_080 Hb_000613_160 Hb_000613_160 Hb_001373_100--Hb_000613_160 Hb_003095_070 Hb_003095_070 Hb_001373_100--Hb_003095_070 Hb_012022_100 Hb_012022_100 Hb_001373_100--Hb_012022_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.516 0.984525 2.85967 7.30283 1.81591 2.67292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.3677 142.661 20.8683 2.46127 0.25777

CAGE analysis