Hb_000398_040

Information

Type -
Description -
Location Contig398: 45790-52049
Sequence    

Annotation

kegg
ID rcu:RCOM_0496620
description Auxin response factor, putative
nr
ID XP_002527835.1
description Auxin response factor, putative [Ricinus communis]
swissprot
ID Q8L7G0
description Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2
trembl
ID B9SPB6
description Auxin response factor OS=Ricinus communis GN=RCOM_0496620 PE=3 SV=1
Gene Ontology
ID GO:0006355
description auxin response factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39652: 46027-46249 , PASA_asmbl_39653: 46521-46653 , PASA_asmbl_39654: 47079-47273 , PASA_asmbl_39655: 47564-48263 , PASA_asmbl_39656: 47385-47773 , PASA_asmbl_39657: 50086-50803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_040 0.0 - - Auxin response factor, putative [Ricinus communis]
2 Hb_001775_110 0.0578737747 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
3 Hb_009113_070 0.0654090796 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
4 Hb_000841_020 0.0787296481 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
5 Hb_001083_020 0.0839203569 - - -
6 Hb_114336_020 0.0843796548 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
7 Hb_011534_030 0.0871435782 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
8 Hb_172932_010 0.091523441 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001085_120 0.0925523157 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
10 Hb_004567_120 0.0945455087 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
11 Hb_000108_190 0.0952847329 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
12 Hb_002742_090 0.0969714734 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
13 Hb_012675_060 0.0971857811 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
14 Hb_116898_010 0.0977651258 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
15 Hb_012753_160 0.0979960522 - - ara4-interacting protein, putative [Ricinus communis]
16 Hb_017225_020 0.0982464736 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
17 Hb_000617_150 0.0990052555 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
18 Hb_001360_050 0.1009608336 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
19 Hb_005883_100 0.102266474 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
20 Hb_017948_010 0.1032361953 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000398_040 Hb_000398_040 Hb_001775_110 Hb_001775_110 Hb_000398_040--Hb_001775_110 Hb_009113_070 Hb_009113_070 Hb_000398_040--Hb_009113_070 Hb_000841_020 Hb_000841_020 Hb_000398_040--Hb_000841_020 Hb_001083_020 Hb_001083_020 Hb_000398_040--Hb_001083_020 Hb_114336_020 Hb_114336_020 Hb_000398_040--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_000398_040--Hb_011534_030 Hb_001775_110--Hb_001083_020 Hb_000046_290 Hb_000046_290 Hb_001775_110--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_001775_110--Hb_001360_050 Hb_011909_100 Hb_011909_100 Hb_001775_110--Hb_011909_100 Hb_001775_110--Hb_114336_020 Hb_172932_010 Hb_172932_010 Hb_009113_070--Hb_172932_010 Hb_009113_070--Hb_011534_030 Hb_000617_150 Hb_000617_150 Hb_009113_070--Hb_000617_150 Hb_009113_070--Hb_000841_020 Hb_000143_030 Hb_000143_030 Hb_009113_070--Hb_000143_030 Hb_004126_070 Hb_004126_070 Hb_000841_020--Hb_004126_070 Hb_017225_020 Hb_017225_020 Hb_000841_020--Hb_017225_020 Hb_000108_190 Hb_000108_190 Hb_000841_020--Hb_000108_190 Hb_002111_040 Hb_002111_040 Hb_000841_020--Hb_002111_040 Hb_000230_510 Hb_000230_510 Hb_001083_020--Hb_000230_510 Hb_017948_010 Hb_017948_010 Hb_001083_020--Hb_017948_010 Hb_012675_060 Hb_012675_060 Hb_001083_020--Hb_012675_060 Hb_001083_020--Hb_001360_050 Hb_009393_210 Hb_009393_210 Hb_001083_020--Hb_009393_210 Hb_001235_030 Hb_001235_030 Hb_114336_020--Hb_001235_030 Hb_114336_020--Hb_172932_010 Hb_114336_020--Hb_011534_030 Hb_027625_010 Hb_027625_010 Hb_114336_020--Hb_027625_010 Hb_011534_030--Hb_172932_010 Hb_011534_030--Hb_000617_150 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_019263_020 Hb_019263_020 Hb_011534_030--Hb_019263_020 Hb_001454_190 Hb_001454_190 Hb_011534_030--Hb_001454_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39797 1.0884 2.15521 1.97758 3.32844 3.33826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.48681 9.24922 8.05973 4.3275 3.57377

CAGE analysis