Hb_000398_060

Information

Type -
Description -
Location Contig398: 122997-132094
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23810g
description hypothetical protein
nr
ID XP_012066761.1
description PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
swissprot
ID Q7ZV80
description Survival of motor neuron-related-splicing factor 30 OS=Danio rerio GN=smndc1 PE=2 SV=1
trembl
ID A0A067L5J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00310 PE=4 SV=1
Gene Ontology
ID GO:0005634
description survival of motor neuron-related-splicing factor 30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39658: 123080-123430 , PASA_asmbl_39659: 128876-132071
cDNA
(Sanger)
(ID:Location)		 013_L13.ab1: 128903-132071

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_060 0.0 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
2 Hb_002301_100 0.0580172826 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
3 Hb_005288_130 0.0675941936 - - protein with unknown function [Ricinus communis]
4 Hb_000363_190 0.068477347 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
5 Hb_001828_180 0.078288355 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
6 Hb_012733_040 0.0788318711 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
7 Hb_001269_130 0.0802592025 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
8 Hb_002439_010 0.0823105394 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
9 Hb_000663_060 0.0833113702 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
10 Hb_002272_270 0.0856170389 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
11 Hb_001242_120 0.0860964372 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
12 Hb_008304_020 0.0887184347 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
13 Hb_000167_010 0.0915039574 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000510_340 0.0916353795 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
15 Hb_000409_050 0.0978446201 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
16 Hb_005648_010 0.0980836549 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
17 Hb_011224_160 0.0982910187 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
18 Hb_005946_150 0.0985546851 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
19 Hb_000120_370 0.1000045719 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
20 Hb_001269_600 0.1004954798 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_000398_060 Hb_000398_060 Hb_002301_100 Hb_002301_100 Hb_000398_060--Hb_002301_100 Hb_005288_130 Hb_005288_130 Hb_000398_060--Hb_005288_130 Hb_000363_190 Hb_000363_190 Hb_000398_060--Hb_000363_190 Hb_001828_180 Hb_001828_180 Hb_000398_060--Hb_001828_180 Hb_012733_040 Hb_012733_040 Hb_000398_060--Hb_012733_040 Hb_001269_130 Hb_001269_130 Hb_000398_060--Hb_001269_130 Hb_002301_100--Hb_012733_040 Hb_002301_100--Hb_001828_180 Hb_002301_100--Hb_000363_190 Hb_001242_120 Hb_001242_120 Hb_002301_100--Hb_001242_120 Hb_001493_150 Hb_001493_150 Hb_002301_100--Hb_001493_150 Hb_000116_490 Hb_000116_490 Hb_005288_130--Hb_000116_490 Hb_163175_010 Hb_163175_010 Hb_005288_130--Hb_163175_010 Hb_000840_200 Hb_000840_200 Hb_005288_130--Hb_000840_200 Hb_065525_080 Hb_065525_080 Hb_005288_130--Hb_065525_080 Hb_000663_060 Hb_000663_060 Hb_005288_130--Hb_000663_060 Hb_000363_190--Hb_001828_180 Hb_000363_190--Hb_000663_060 Hb_000409_050 Hb_000409_050 Hb_000363_190--Hb_000409_050 Hb_002232_360 Hb_002232_360 Hb_000363_190--Hb_002232_360 Hb_001828_180--Hb_000663_060 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_023001_040 Hb_023001_040 Hb_001828_180--Hb_023001_040 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010 Hb_012733_040--Hb_001242_120 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_000364_050 Hb_000364_050 Hb_012733_040--Hb_000364_050 Hb_004452_120 Hb_004452_120 Hb_012733_040--Hb_004452_120 Hb_003159_050 Hb_003159_050 Hb_012733_040--Hb_003159_050 Hb_001269_130--Hb_000663_060 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_001269_130--Hb_000364_050 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1045 13.9733 30.0438 29.9867 13.2156 12.7633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0039 24.6436 9.3896 35.4891 27.6259

CAGE analysis