Hb_000398_120

Information

Type -
Description -
Location Contig398: 193511-205130
Sequence    

Annotation

kegg
ID rcu:RCOM_0495780
description Squamous cell carcinoma antigen recognized by T-cells, putative
nr
ID XP_012454809.1
description PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]
swissprot
ID B3DJT0
description Squamous cell carcinoma antigen recognized by T-cells 3 OS=Danio rerio GN=sart3 PE=2 SV=1
trembl
ID A0A0D2UQ57
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G090800 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamous cell carcinoma antigen recognized by t-cells 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39670: 193465-205072 , PASA_asmbl_39671: 195634-195900
cDNA
(Sanger)
(ID:Location)		 017_A21.ab1: 197866-200804

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_120 0.0 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]
2 Hb_011310_160 0.0668131417 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
3 Hb_003294_090 0.0877348849 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001529_040 0.0918400943 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
5 Hb_003253_040 0.0934715258 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
6 Hb_006660_010 0.0961289191 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
7 Hb_143629_110 0.0974691575 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
8 Hb_123903_010 0.0997747915 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
9 Hb_010174_040 0.1010853088 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
10 Hb_003060_060 0.1026685021 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
11 Hb_011928_020 0.1045468305 - - something about silencing protein sas10, putative [Ricinus communis]
12 Hb_003988_010 0.1050004449 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
13 Hb_010174_110 0.1052396696 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
14 Hb_000592_030 0.1073143305 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
15 Hb_001473_180 0.107872442 - - glutathione reductase [Hevea brasiliensis]
16 Hb_002740_110 0.10843743 - - PREDICTED: phytochrome A [Jatropha curcas]
17 Hb_000159_100 0.1090003702 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
18 Hb_000470_080 0.1103538754 - - Caldesmon, putative [Ricinus communis]
19 Hb_001232_010 0.1111777983 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
20 Hb_000390_320 0.1116588531 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]

Gene co-expression network

sample Hb_000398_120 Hb_000398_120 Hb_011310_160 Hb_011310_160 Hb_000398_120--Hb_011310_160 Hb_003294_090 Hb_003294_090 Hb_000398_120--Hb_003294_090 Hb_001529_040 Hb_001529_040 Hb_000398_120--Hb_001529_040 Hb_003253_040 Hb_003253_040 Hb_000398_120--Hb_003253_040 Hb_006660_010 Hb_006660_010 Hb_000398_120--Hb_006660_010 Hb_143629_110 Hb_143629_110 Hb_000398_120--Hb_143629_110 Hb_011310_160--Hb_006660_010 Hb_003988_010 Hb_003988_010 Hb_011310_160--Hb_003988_010 Hb_025477_040 Hb_025477_040 Hb_011310_160--Hb_025477_040 Hb_010174_040 Hb_010174_040 Hb_011310_160--Hb_010174_040 Hb_002974_060 Hb_002974_060 Hb_011310_160--Hb_002974_060 Hb_003294_090--Hb_003253_040 Hb_005901_020 Hb_005901_020 Hb_003294_090--Hb_005901_020 Hb_002740_110 Hb_002740_110 Hb_003294_090--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003294_090--Hb_010174_110 Hb_015175_020 Hb_015175_020 Hb_003294_090--Hb_015175_020 Hb_002063_020 Hb_002063_020 Hb_003294_090--Hb_002063_020 Hb_003060_060 Hb_003060_060 Hb_001529_040--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_001529_040--Hb_000395_070 Hb_001913_060 Hb_001913_060 Hb_001529_040--Hb_001913_060 Hb_000494_070 Hb_000494_070 Hb_001529_040--Hb_000494_070 Hb_001529_040--Hb_002740_110 Hb_000740_100 Hb_000740_100 Hb_001529_040--Hb_000740_100 Hb_003253_040--Hb_002740_110 Hb_003253_040--Hb_010174_110 Hb_001199_100 Hb_001199_100 Hb_003253_040--Hb_001199_100 Hb_002942_100 Hb_002942_100 Hb_003253_040--Hb_002942_100 Hb_003253_040--Hb_002063_020 Hb_004143_130 Hb_004143_130 Hb_003253_040--Hb_004143_130 Hb_007803_050 Hb_007803_050 Hb_006660_010--Hb_007803_050 Hb_002811_060 Hb_002811_060 Hb_006660_010--Hb_002811_060 Hb_000212_310 Hb_000212_310 Hb_006660_010--Hb_000212_310 Hb_007062_020 Hb_007062_020 Hb_006660_010--Hb_007062_020 Hb_000592_030 Hb_000592_030 Hb_006660_010--Hb_000592_030 Hb_032202_200 Hb_032202_200 Hb_143629_110--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_143629_110--Hb_123903_010 Hb_000390_320 Hb_000390_320 Hb_143629_110--Hb_000390_320 Hb_001617_060 Hb_001617_060 Hb_143629_110--Hb_001617_060 Hb_143629_110--Hb_025477_040 Hb_000617_180 Hb_000617_180 Hb_143629_110--Hb_000617_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3474 10.5238 8.16827 10.497 21.7257 20.75
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.099 8.5672 20.1136 28.4884 14.4956

CAGE analysis