Hb_000398_180

Information

Type -
Description -
Location Contig398: 253730-258403
Sequence    

Annotation

kegg
ID pmum:103336120
description probable protein phosphatase 2C 9
nr
ID XP_007201875.1
description hypothetical protein PRUPE_ppa009665mg [Prunus persica]
swissprot
ID Q9S9Z7
description Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=2 SV=1
trembl
ID M5VPA7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009665mg PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable protein phosphatase 2c 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39675: 253825-258360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_180 0.0 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
2 Hb_028872_140 0.0525330374 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
3 Hb_001377_290 0.0529720307 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
4 Hb_004195_160 0.0535555312 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
5 Hb_011689_080 0.0540013109 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
6 Hb_006332_020 0.0555176309 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
7 Hb_007380_070 0.0577663187 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
8 Hb_001138_050 0.059446671 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
9 Hb_002078_150 0.0599723041 - - protein with unknown function [Ricinus communis]
10 Hb_004440_090 0.0648706406 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
11 Hb_000243_030 0.0652145407 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
12 Hb_006541_030 0.0661645475 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
13 Hb_118707_030 0.0671193334 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
14 Hb_000103_560 0.0676444837 - - ADP-ribosylation factor, putative [Ricinus communis]
15 Hb_010504_020 0.0686864023 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_000510_130 0.068988292 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
17 Hb_125000_010 0.0696282615 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
18 Hb_063716_050 0.0696471835 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
19 Hb_001226_160 0.0697723549 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
20 Hb_007426_230 0.070594179 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]

Gene co-expression network

sample Hb_000398_180 Hb_000398_180 Hb_028872_140 Hb_028872_140 Hb_000398_180--Hb_028872_140 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_001377_290--Hb_011689_080 Hb_003392_040 Hb_003392_040 Hb_001377_290--Hb_003392_040 Hb_001138_050 Hb_001138_050 Hb_001377_290--Hb_001138_050 Hb_001377_290--Hb_004195_160 Hb_002078_150 Hb_002078_150 Hb_001377_290--Hb_002078_150 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110 Hb_003058_130 Hb_003058_130 Hb_011689_080--Hb_003058_130 Hb_011689_080--Hb_003392_040 Hb_004324_310 Hb_004324_310 Hb_011689_080--Hb_004324_310 Hb_003001_120 Hb_003001_120 Hb_011689_080--Hb_003001_120 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110 Hb_006541_030 Hb_006541_030 Hb_007380_070--Hb_006541_030 Hb_001671_020 Hb_001671_020 Hb_007380_070--Hb_001671_020 Hb_003929_160 Hb_003929_160 Hb_007380_070--Hb_003929_160 Hb_005539_350 Hb_005539_350 Hb_007380_070--Hb_005539_350 Hb_007380_070--Hb_028872_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.0087 30.7635 21.1368 28.7209 63.4528 79.9599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.7213 78.3176 63.0925 28.3615 21.252

CAGE analysis