Hb_000399_060

Information

Type -
Description -
Location Contig399: 176508-187439
Sequence    

Annotation

kegg
ID rcu:RCOM_1014660
description hypothetical protein
nr
ID XP_012091759.1
description PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
swissprot
ID P53980
description Uncharacterized protein YNL011C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL011C PE=1 SV=1
trembl
ID A0A067JNJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21550 PE=4 SV=1
Gene Ontology
ID GO:0008233
description maternal effect embryo arrest 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39691: 176964-187483 , PASA_asmbl_39692: 179646-187483 , PASA_asmbl_39693: 176602-179039
cDNA
(Sanger)
(ID:Location)		 051_D07.ab1: 176604-178831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000399_060 0.0 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
2 Hb_000320_340 0.0784055577 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
3 Hb_011926_040 0.0885127657 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_000014_040 0.0933907017 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000665_180 0.0947509202 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
6 Hb_001157_230 0.0954477513 - - Protein AFR, putative [Ricinus communis]
7 Hb_008406_180 0.0987599736 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
8 Hb_000390_050 0.1019560127 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
9 Hb_000189_480 0.106192937 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
10 Hb_003540_080 0.1069164957 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_000638_070 0.1072682768 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
12 Hb_000066_030 0.1073156797 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
13 Hb_007765_040 0.1080214507 - - Cytosolic enolase isoform 3 [Theobroma cacao]
14 Hb_000008_340 0.1100490162 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
15 Hb_002928_090 0.1103783971 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
16 Hb_009661_030 0.1114796345 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
17 Hb_003058_100 0.1124470529 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
18 Hb_000395_110 0.1125053349 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
19 Hb_001491_030 0.1141858573 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
20 Hb_014361_060 0.1148623417 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000399_060 Hb_000399_060 Hb_000320_340 Hb_000320_340 Hb_000399_060--Hb_000320_340 Hb_011926_040 Hb_011926_040 Hb_000399_060--Hb_011926_040 Hb_000014_040 Hb_000014_040 Hb_000399_060--Hb_000014_040 Hb_000665_180 Hb_000665_180 Hb_000399_060--Hb_000665_180 Hb_001157_230 Hb_001157_230 Hb_000399_060--Hb_001157_230 Hb_008406_180 Hb_008406_180 Hb_000399_060--Hb_008406_180 Hb_000189_480 Hb_000189_480 Hb_000320_340--Hb_000189_480 Hb_000320_340--Hb_008406_180 Hb_000320_340--Hb_001157_230 Hb_000860_060 Hb_000860_060 Hb_000320_340--Hb_000860_060 Hb_014361_060 Hb_014361_060 Hb_000320_340--Hb_014361_060 Hb_009913_040 Hb_009913_040 Hb_011926_040--Hb_009913_040 Hb_006006_060 Hb_006006_060 Hb_011926_040--Hb_006006_060 Hb_000173_060 Hb_000173_060 Hb_011926_040--Hb_000173_060 Hb_174865_040 Hb_174865_040 Hb_011926_040--Hb_174865_040 Hb_000638_070 Hb_000638_070 Hb_011926_040--Hb_000638_070 Hb_002928_090 Hb_002928_090 Hb_000014_040--Hb_002928_090 Hb_001051_050 Hb_001051_050 Hb_000014_040--Hb_001051_050 Hb_000390_050 Hb_000390_050 Hb_000014_040--Hb_000390_050 Hb_170138_010 Hb_170138_010 Hb_000014_040--Hb_170138_010 Hb_000684_210 Hb_000684_210 Hb_000014_040--Hb_000684_210 Hb_000008_340 Hb_000008_340 Hb_000665_180--Hb_000008_340 Hb_000395_110 Hb_000395_110 Hb_000665_180--Hb_000395_110 Hb_000665_180--Hb_000638_070 Hb_185830_060 Hb_185830_060 Hb_000665_180--Hb_185830_060 Hb_002955_020 Hb_002955_020 Hb_000665_180--Hb_002955_020 Hb_002193_060 Hb_002193_060 Hb_000665_180--Hb_002193_060 Hb_001876_040 Hb_001876_040 Hb_001157_230--Hb_001876_040 Hb_000212_120 Hb_000212_120 Hb_001157_230--Hb_000212_120 Hb_022250_010 Hb_022250_010 Hb_001157_230--Hb_022250_010 Hb_032202_220 Hb_032202_220 Hb_001157_230--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001157_230--Hb_024184_010 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_000049_020 Hb_000049_020 Hb_008406_180--Hb_000049_020 Hb_000890_230 Hb_000890_230 Hb_008406_180--Hb_000890_230 Hb_002400_320 Hb_002400_320 Hb_008406_180--Hb_002400_320 Hb_008406_180--Hb_001157_230 Hb_000056_130 Hb_000056_130 Hb_008406_180--Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_008406_180--Hb_002226_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49282 0.969295 2.98038 6.47277 1.74789 1.78397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03606 0.965825 1.72845 1.95484 4.63945

CAGE analysis