Hb_000401_010

Information

Type -
Description -
Location Contig401: 8490-36151
Sequence    

Annotation

kegg
ID rcu:RCOM_0482880
description SAB, putative
nr
ID XP_002527368.1
description SAB, putative [Ricinus communis]
swissprot
ID Q6IMT1
description Protein SABRE OS=Arabidopsis thaliana GN=SAB PE=1 SV=1
trembl
ID B9SMZ9
description SAB, putative OS=Ricinus communis GN=RCOM_0482880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39885: 8582-9676 , PASA_asmbl_39886: 16650-17002 , PASA_asmbl_39888: 25172-25480 , PASA_asmbl_39889: 35777-35936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000401_010 0.0 - - SAB, putative [Ricinus communis]
2 Hb_000235_050 0.1005214817 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003050_150 0.1166108144 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
4 Hb_002235_190 0.133581194 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000205_280 0.1353260045 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
6 Hb_000297_030 0.1370054566 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
7 Hb_002025_270 0.1376428505 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
8 Hb_024758_020 0.1415115203 - - acyl-CoA binding protein 3B [Vernicia fordii]
9 Hb_002687_060 0.1436025582 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
10 Hb_158845_060 0.1445340804 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
11 Hb_000122_080 0.145062528 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
12 Hb_000248_100 0.1455847938 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
13 Hb_012180_010 0.1462506225 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
14 Hb_148682_010 0.1497946455 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
15 Hb_062558_010 0.1514548938 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
16 Hb_135959_010 0.1541089369 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
17 Hb_005833_030 0.1544032965 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
18 Hb_000106_020 0.1555734111 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
19 Hb_103688_010 0.1562472052 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
20 Hb_005298_020 0.1567282259 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000401_010 Hb_000401_010 Hb_000235_050 Hb_000235_050 Hb_000401_010--Hb_000235_050 Hb_003050_150 Hb_003050_150 Hb_000401_010--Hb_003050_150 Hb_002235_190 Hb_002235_190 Hb_000401_010--Hb_002235_190 Hb_000205_280 Hb_000205_280 Hb_000401_010--Hb_000205_280 Hb_000297_030 Hb_000297_030 Hb_000401_010--Hb_000297_030 Hb_002025_270 Hb_002025_270 Hb_000401_010--Hb_002025_270 Hb_003227_010 Hb_003227_010 Hb_000235_050--Hb_003227_010 Hb_010872_040 Hb_010872_040 Hb_000235_050--Hb_010872_040 Hb_000248_100 Hb_000248_100 Hb_000235_050--Hb_000248_100 Hb_005970_010 Hb_005970_010 Hb_000235_050--Hb_005970_010 Hb_008053_060 Hb_008053_060 Hb_000235_050--Hb_008053_060 Hb_000732_230 Hb_000732_230 Hb_003050_150--Hb_000732_230 Hb_001205_180 Hb_001205_180 Hb_003050_150--Hb_001205_180 Hb_115513_040 Hb_115513_040 Hb_003050_150--Hb_115513_040 Hb_004800_130 Hb_004800_130 Hb_003050_150--Hb_004800_130 Hb_003050_150--Hb_002025_270 Hb_002553_010 Hb_002553_010 Hb_003050_150--Hb_002553_010 Hb_000244_280 Hb_000244_280 Hb_002235_190--Hb_000244_280 Hb_000363_410 Hb_000363_410 Hb_002235_190--Hb_000363_410 Hb_001488_280 Hb_001488_280 Hb_002235_190--Hb_001488_280 Hb_002093_050 Hb_002093_050 Hb_002235_190--Hb_002093_050 Hb_000823_010 Hb_000823_010 Hb_002235_190--Hb_000823_010 Hb_001103_090 Hb_001103_090 Hb_000205_280--Hb_001103_090 Hb_000260_780 Hb_000260_780 Hb_000205_280--Hb_000260_780 Hb_001159_030 Hb_001159_030 Hb_000205_280--Hb_001159_030 Hb_158845_060 Hb_158845_060 Hb_000205_280--Hb_158845_060 Hb_000784_080 Hb_000784_080 Hb_000205_280--Hb_000784_080 Hb_000054_040 Hb_000054_040 Hb_000205_280--Hb_000054_040 Hb_006468_010 Hb_006468_010 Hb_000297_030--Hb_006468_010 Hb_000297_030--Hb_158845_060 Hb_016461_020 Hb_016461_020 Hb_000297_030--Hb_016461_020 Hb_000890_160 Hb_000890_160 Hb_000297_030--Hb_000890_160 Hb_000046_600 Hb_000046_600 Hb_000297_030--Hb_000046_600 Hb_024758_020 Hb_024758_020 Hb_000297_030--Hb_024758_020 Hb_005298_020 Hb_005298_020 Hb_002025_270--Hb_005298_020 Hb_001646_010 Hb_001646_010 Hb_002025_270--Hb_001646_010 Hb_005772_030 Hb_005772_030 Hb_002025_270--Hb_005772_030 Hb_002025_270--Hb_024758_020 Hb_002809_160 Hb_002809_160 Hb_002025_270--Hb_002809_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.149377 0.568563 0.696513 0.72061 0.436299 0.339034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0708697 0.0916338 0.0539017 0.930556 0.240713

CAGE analysis