Hb_000402_010

Information

Type transcription factor
Description TF Family: HB
Location Contig402: 2062-11591
Sequence    

Annotation

kegg
ID vvi:100246480
description homeobox protein knotted-1-like 6
nr
ID XP_012085436.1
description PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
swissprot
ID Q84JS6
description Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1
trembl
ID A0A067JUW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17781 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_010 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
2 Hb_004788_040 0.2324232545 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_005389_110 0.2413545773 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
4 Hb_001269_040 0.2426012052 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_002273_050 0.2427689517 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
6 Hb_134894_010 0.2481892647 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
7 Hb_009848_030 0.2507570223 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
8 Hb_001635_050 0.2570472561 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
9 Hb_000315_030 0.258555539 - - carbohydrate binding protein, putative [Ricinus communis]
10 Hb_006586_030 0.2588128386 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
11 Hb_007144_010 0.2596115628 - - -
12 Hb_001989_020 0.2606837511 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
13 Hb_000828_040 0.2609263616 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
14 Hb_084429_010 0.2633612606 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
15 Hb_004096_080 0.2634385882 - - PREDICTED: IST1 homolog [Jatropha curcas]
16 Hb_027445_050 0.2666798668 - - PREDICTED: titin isoform X13 [Jatropha curcas]
17 Hb_002273_060 0.2674068035 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000283_150 0.2680842159 - - Ankyrin repeat family protein [Theobroma cacao]
19 Hb_001104_240 0.268460963 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
20 Hb_011344_170 0.2695478427 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]

Gene co-expression network

sample Hb_000402_010 Hb_000402_010 Hb_004788_040 Hb_004788_040 Hb_000402_010--Hb_004788_040 Hb_005389_110 Hb_005389_110 Hb_000402_010--Hb_005389_110 Hb_001269_040 Hb_001269_040 Hb_000402_010--Hb_001269_040 Hb_002273_050 Hb_002273_050 Hb_000402_010--Hb_002273_050 Hb_134894_010 Hb_134894_010 Hb_000402_010--Hb_134894_010 Hb_009848_030 Hb_009848_030 Hb_000402_010--Hb_009848_030 Hb_003623_070 Hb_003623_070 Hb_004788_040--Hb_003623_070 Hb_001635_050 Hb_001635_050 Hb_004788_040--Hb_001635_050 Hb_001269_690 Hb_001269_690 Hb_004788_040--Hb_001269_690 Hb_000140_410 Hb_000140_410 Hb_004788_040--Hb_000140_410 Hb_001529_050 Hb_001529_050 Hb_004788_040--Hb_001529_050 Hb_001104_240 Hb_001104_240 Hb_004788_040--Hb_001104_240 Hb_018344_010 Hb_018344_010 Hb_005389_110--Hb_018344_010 Hb_000270_210 Hb_000270_210 Hb_005389_110--Hb_000270_210 Hb_003929_060 Hb_003929_060 Hb_005389_110--Hb_003929_060 Hb_002735_040 Hb_002735_040 Hb_005389_110--Hb_002735_040 Hb_000640_150 Hb_000640_150 Hb_005389_110--Hb_000640_150 Hb_002686_280 Hb_002686_280 Hb_001269_040--Hb_002686_280 Hb_002273_080 Hb_002273_080 Hb_001269_040--Hb_002273_080 Hb_001269_040--Hb_002273_050 Hb_012404_040 Hb_012404_040 Hb_001269_040--Hb_012404_040 Hb_001338_050 Hb_001338_050 Hb_001269_040--Hb_001338_050 Hb_025194_010 Hb_025194_010 Hb_001269_040--Hb_025194_010 Hb_002273_050--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_002273_050--Hb_001269_690 Hb_002273_050--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_050--Hb_129204_060 Hb_006586_030 Hb_006586_030 Hb_134894_010--Hb_006586_030 Hb_001524_090 Hb_001524_090 Hb_134894_010--Hb_001524_090 Hb_027445_050 Hb_027445_050 Hb_134894_010--Hb_027445_050 Hb_001989_020 Hb_001989_020 Hb_134894_010--Hb_001989_020 Hb_000283_150 Hb_000283_150 Hb_134894_010--Hb_000283_150 Hb_009848_040 Hb_009848_040 Hb_134894_010--Hb_009848_040 Hb_000032_310 Hb_000032_310 Hb_009848_030--Hb_000032_310 Hb_009848_030--Hb_001989_020 Hb_001396_260 Hb_001396_260 Hb_009848_030--Hb_001396_260 Hb_000521_170 Hb_000521_170 Hb_009848_030--Hb_000521_170 Hb_003656_120 Hb_003656_120 Hb_009848_030--Hb_003656_120 Hb_009848_030--Hb_009848_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8701 16.1228 0 0.42238 7.09768 5.66245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28369 1.19001 0.439127 16.6711 0

CAGE analysis