Hb_000402_080

Information

Type -
Description -
Location Contig402: 98559-101434
Sequence    

Annotation

kegg
ID rcu:RCOM_0024330
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085455.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
swissprot
ID O22714
description Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
trembl
ID A0A067K311
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17793 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at1g60770-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39921: 100278-100507 , PASA_asmbl_39922: 101275-101477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
2 Hb_000928_220 0.0515910023 - - PREDICTED: protein SCAI [Jatropha curcas]
3 Hb_000076_160 0.0636306964 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
4 Hb_001104_160 0.0685635652 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
5 Hb_008453_140 0.069239557 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
6 Hb_002876_130 0.0698423816 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
7 Hb_000696_230 0.0719428349 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
8 Hb_002078_110 0.0726638136 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
9 Hb_002835_230 0.074144174 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_004195_200 0.0748983675 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
11 Hb_000705_170 0.0768813089 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
12 Hb_112798_020 0.0768967659 - - dnajc14 protein, putative [Ricinus communis]
13 Hb_000679_310 0.0775305553 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
14 Hb_021419_030 0.0785262903 - - hypothetical protein glysoja_023295 [Glycine soja]
15 Hb_010381_090 0.0791348594 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
16 Hb_008103_060 0.0798288569 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
17 Hb_000289_040 0.0806261916 - - Poly(A) polymerase alpha, putative [Ricinus communis]
18 Hb_152175_010 0.0809746386 - - Protein grpE, putative [Ricinus communis]
19 Hb_003666_020 0.0810659015 - - kinase, putative [Ricinus communis]
20 Hb_001780_020 0.0812335182 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000402_080 Hb_000402_080 Hb_000928_220 Hb_000928_220 Hb_000402_080--Hb_000928_220 Hb_000076_160 Hb_000076_160 Hb_000402_080--Hb_000076_160 Hb_001104_160 Hb_001104_160 Hb_000402_080--Hb_001104_160 Hb_008453_140 Hb_008453_140 Hb_000402_080--Hb_008453_140 Hb_002876_130 Hb_002876_130 Hb_000402_080--Hb_002876_130 Hb_000696_230 Hb_000696_230 Hb_000402_080--Hb_000696_230 Hb_000928_220--Hb_002876_130 Hb_000928_220--Hb_000076_160 Hb_002078_110 Hb_002078_110 Hb_000928_220--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_000928_220--Hb_002835_230 Hb_002046_110 Hb_002046_110 Hb_000928_220--Hb_002046_110 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_004195_200 Hb_004195_200 Hb_001104_160--Hb_004195_200 Hb_000289_040 Hb_000289_040 Hb_001104_160--Hb_000289_040 Hb_001104_160--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_001104_160--Hb_014361_070 Hb_001104_160--Hb_000696_230 Hb_120410_010 Hb_120410_010 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_003125_120 Hb_003125_120 Hb_008453_140--Hb_003125_120 Hb_001142_030 Hb_001142_030 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_002876_130--Hb_000289_040 Hb_140049_040 Hb_140049_040 Hb_002876_130--Hb_140049_040 Hb_002876_130--Hb_002078_110 Hb_002876_130--Hb_004195_200 Hb_002876_130--Hb_000076_160 Hb_000975_040 Hb_000975_040 Hb_000696_230--Hb_000975_040 Hb_000484_030 Hb_000484_030 Hb_000696_230--Hb_000484_030 Hb_000441_120 Hb_000441_120 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.50006 8.25836 6.39373 5.89257 8.9729 5.32362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33608 7.38776 5.03089 5.56713 3.73514

CAGE analysis