Hb_000402_090

Information

Type -
Description -
Location Contig402: 103976-107904
Sequence    

Annotation

kegg
ID rcu:RCOM_0024340
description catalytic, putative
nr
ID KHN14548.1
description Lipase [Glycine soja]
swissprot
ID P04635
description Lipase OS=Staphylococcus hyicus GN=lip PE=1 SV=1
trembl
ID A0A0B2Q3I8
description Lipase OS=Glycine soja GN=glysoja_027157 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta-hydrolases superfamily protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39923: 105567-106040 , PASA_asmbl_39924: 104220-106296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_090 0.0 - - Lipase [Glycine soja]
2 Hb_000035_490 0.139737816 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
3 Hb_001294_050 0.1598775548 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
4 Hb_005332_140 0.1608829915 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
5 Hb_000318_410 0.1670078077 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
6 Hb_000753_140 0.1683856222 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
7 Hb_000086_640 0.1694406942 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
8 Hb_001369_020 0.1708514071 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
9 Hb_132840_020 0.1737946708 - - PREDICTED: protein LHY [Jatropha curcas]
10 Hb_007193_030 0.174601549 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
11 Hb_002639_130 0.1766466453 - - hypothetical protein JCGZ_08129 [Jatropha curcas]
12 Hb_001386_020 0.1797495337 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002383_050 0.1805160852 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
14 Hb_005080_020 0.1851207587 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
15 Hb_000027_180 0.1853467396 - - PREDICTED: uncharacterized protein LOC105642058 [Jatropha curcas]
16 Hb_121089_020 0.1857381336 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
17 Hb_000446_040 0.1877631475 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
18 Hb_000035_060 0.1881496686 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
19 Hb_011381_070 0.1892448424 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
20 Hb_002997_110 0.1895419088 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000402_090 Hb_000402_090 Hb_000035_490 Hb_000035_490 Hb_000402_090--Hb_000035_490 Hb_001294_050 Hb_001294_050 Hb_000402_090--Hb_001294_050 Hb_005332_140 Hb_005332_140 Hb_000402_090--Hb_005332_140 Hb_000318_410 Hb_000318_410 Hb_000402_090--Hb_000318_410 Hb_000753_140 Hb_000753_140 Hb_000402_090--Hb_000753_140 Hb_000086_640 Hb_000086_640 Hb_000402_090--Hb_000086_640 Hb_011381_070 Hb_011381_070 Hb_000035_490--Hb_011381_070 Hb_000035_490--Hb_000086_640 Hb_001021_100 Hb_001021_100 Hb_000035_490--Hb_001021_100 Hb_132840_020 Hb_132840_020 Hb_000035_490--Hb_132840_020 Hb_001863_340 Hb_001863_340 Hb_000035_490--Hb_001863_340 Hb_011671_110 Hb_011671_110 Hb_000035_490--Hb_011671_110 Hb_001102_090 Hb_001102_090 Hb_001294_050--Hb_001102_090 Hb_001294_050--Hb_132840_020 Hb_000336_180 Hb_000336_180 Hb_001294_050--Hb_000336_180 Hb_001627_010 Hb_001627_010 Hb_001294_050--Hb_001627_010 Hb_048476_040 Hb_048476_040 Hb_001294_050--Hb_048476_040 Hb_005725_280 Hb_005725_280 Hb_001294_050--Hb_005725_280 Hb_003581_280 Hb_003581_280 Hb_005332_140--Hb_003581_280 Hb_003177_070 Hb_003177_070 Hb_005332_140--Hb_003177_070 Hb_005332_140--Hb_001102_090 Hb_001474_050 Hb_001474_050 Hb_005332_140--Hb_001474_050 Hb_002281_010 Hb_002281_010 Hb_005332_140--Hb_002281_010 Hb_002900_120 Hb_002900_120 Hb_005332_140--Hb_002900_120 Hb_000318_410--Hb_000753_140 Hb_033930_010 Hb_033930_010 Hb_000318_410--Hb_033930_010 Hb_000318_410--Hb_132840_020 Hb_000622_210 Hb_000622_210 Hb_000318_410--Hb_000622_210 Hb_002639_130 Hb_002639_130 Hb_000318_410--Hb_002639_130 Hb_000318_410--Hb_000086_640 Hb_002804_010 Hb_002804_010 Hb_000753_140--Hb_002804_010 Hb_000753_140--Hb_000086_640 Hb_001386_020 Hb_001386_020 Hb_000753_140--Hb_001386_020 Hb_015807_080 Hb_015807_080 Hb_000753_140--Hb_015807_080 Hb_000753_140--Hb_132840_020 Hb_000086_640--Hb_132840_020 Hb_000086_640--Hb_015807_080 Hb_000086_640--Hb_033930_010 Hb_005941_020 Hb_005941_020 Hb_000086_640--Hb_005941_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0657678 11.9595 11.5198 4.82458 2.38268 0.242652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.438279 1.72424 1.65118 2.26777 8.242

CAGE analysis