Hb_000402_100

Information

Type -
Description -
Location Contig402: 109597-126210
Sequence    

Annotation

kegg
ID rcu:RCOM_0024350
description Alliin lyase precursor, putative (EC:4.4.1.4)
nr
ID XP_012085457.1
description PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
swissprot
ID Q9S7N2
description L-tryptophan--pyruvate aminotransferase 1 OS=Arabidopsis thaliana GN=TAA1 PE=1 SV=1
trembl
ID A0A067JRW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17795 PE=4 SV=1
Gene Ontology
ID GO:0005634
description l-tryptophan--pyruvate aminotransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_100 0.0 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
2 Hb_001204_020 0.2396382619 - - Uncharacterized protein TCM_021965 [Theobroma cacao]
3 Hb_001411_040 0.2437622955 - - hypothetical protein VITISV_010644 [Vitis vinifera]
4 Hb_000003_360 0.2478417119 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
5 Hb_006452_230 0.2569728993 - - PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
6 Hb_000175_190 0.263099757 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
7 Hb_002759_110 0.2882314573 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]
8 Hb_000154_040 0.2882446394 - - hypothetical protein JCGZ_25602 [Jatropha curcas]
9 Hb_004934_120 0.2909635251 - - -
10 Hb_000191_080 0.2979886631 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
11 Hb_027298_030 0.3053832706 - - PREDICTED: histone H1-like [Jatropha curcas]
12 Hb_003673_040 0.3068126879 - - dynamin family protein [Populus trichocarpa]
13 Hb_017845_010 0.3088993187 - - -
14 Hb_003181_060 0.3100145231 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
15 Hb_000116_360 0.3116550789 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
16 Hb_007157_010 0.3155784081 - - -
17 Hb_000156_210 0.3184361039 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
18 Hb_097218_020 0.3185771252 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
19 Hb_021079_010 0.3191257618 - - PREDICTED: histone H2B-like [Populus euphratica]
20 Hb_003376_380 0.3217059872 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]

Gene co-expression network

sample Hb_000402_100 Hb_000402_100 Hb_001204_020 Hb_001204_020 Hb_000402_100--Hb_001204_020 Hb_001411_040 Hb_001411_040 Hb_000402_100--Hb_001411_040 Hb_000003_360 Hb_000003_360 Hb_000402_100--Hb_000003_360 Hb_006452_230 Hb_006452_230 Hb_000402_100--Hb_006452_230 Hb_000175_190 Hb_000175_190 Hb_000402_100--Hb_000175_190 Hb_002759_110 Hb_002759_110 Hb_000402_100--Hb_002759_110 Hb_000154_040 Hb_000154_040 Hb_001204_020--Hb_000154_040 Hb_001204_020--Hb_000003_360 Hb_003124_020 Hb_003124_020 Hb_001204_020--Hb_003124_020 Hb_011249_050 Hb_011249_050 Hb_001204_020--Hb_011249_050 Hb_153216_010 Hb_153216_010 Hb_001204_020--Hb_153216_010 Hb_001755_030 Hb_001755_030 Hb_001411_040--Hb_001755_030 Hb_001405_140 Hb_001405_140 Hb_001411_040--Hb_001405_140 Hb_000879_230 Hb_000879_230 Hb_001411_040--Hb_000879_230 Hb_001294_030 Hb_001294_030 Hb_001411_040--Hb_001294_030 Hb_007632_170 Hb_007632_170 Hb_001411_040--Hb_007632_170 Hb_000156_210 Hb_000156_210 Hb_000003_360--Hb_000156_210 Hb_000191_080 Hb_000191_080 Hb_000003_360--Hb_000191_080 Hb_001435_020 Hb_001435_020 Hb_000003_360--Hb_001435_020 Hb_101430_010 Hb_101430_010 Hb_000003_360--Hb_101430_010 Hb_000530_120 Hb_000530_120 Hb_000003_360--Hb_000530_120 Hb_007157_010 Hb_007157_010 Hb_006452_230--Hb_007157_010 Hb_030131_010 Hb_030131_010 Hb_006452_230--Hb_030131_010 Hb_000331_520 Hb_000331_520 Hb_006452_230--Hb_000331_520 Hb_172665_010 Hb_172665_010 Hb_006452_230--Hb_172665_010 Hb_001366_070 Hb_001366_070 Hb_006452_230--Hb_001366_070 Hb_000723_340 Hb_000723_340 Hb_000175_190--Hb_000723_340 Hb_027298_030 Hb_027298_030 Hb_000175_190--Hb_027298_030 Hb_017845_010 Hb_017845_010 Hb_000175_190--Hb_017845_010 Hb_000175_190--Hb_002759_110 Hb_001823_060 Hb_001823_060 Hb_000175_190--Hb_001823_060 Hb_097218_020 Hb_097218_020 Hb_000175_190--Hb_097218_020 Hb_000270_610 Hb_000270_610 Hb_002759_110--Hb_000270_610 Hb_002759_110--Hb_001823_060 Hb_005144_070 Hb_005144_070 Hb_002759_110--Hb_005144_070 Hb_000577_090 Hb_000577_090 Hb_002759_110--Hb_000577_090 Hb_000111_100 Hb_000111_100 Hb_002759_110--Hb_000111_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0103024 0 0.0123281 0.00584939 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0188819 0.0445729 0 0.0118055 0.0315363

CAGE analysis