Hb_000402_200

Information

Type -
Description -
Location Contig402: 189508-191352
Sequence    

Annotation

kegg
ID rcu:RCOM_0024690
description hypothetical protein
nr
ID XP_012085473.1
description PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4D6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17807 PE=4 SV=1
Gene Ontology
ID GO:0009506
description arm repeat protein interacting with abf2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_200 0.0 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
2 Hb_021068_050 0.0904928683 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
3 Hb_001439_120 0.096491403 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001143_170 0.0973319597 - - nucellin, putative [Ricinus communis]
5 Hb_010638_020 0.0983129158 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
6 Hb_018790_060 0.1026931304 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
7 Hb_022216_020 0.1058431765 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_004108_050 0.1080456119 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
9 Hb_001008_060 0.108364039 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
10 Hb_010931_090 0.1131124938 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002603_100 0.1155560858 - - ATATH9, putative [Ricinus communis]
12 Hb_000008_250 0.1169639741 - - conserved hypothetical protein [Ricinus communis]
13 Hb_026988_020 0.1179902976 - - outward rectifying K+ channel [Hevea brasiliensis]
14 Hb_005333_130 0.1180446758 - - conserved hypothetical protein [Ricinus communis]
15 Hb_023386_080 0.118134461 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
16 Hb_182026_020 0.1184137784 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
17 Hb_176681_010 0.1184491587 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
18 Hb_003018_200 0.1203586696 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
19 Hb_010863_080 0.121274075 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
20 Hb_000376_050 0.1231112702 - - polyadenylate-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000402_200 Hb_000402_200 Hb_021068_050 Hb_021068_050 Hb_000402_200--Hb_021068_050 Hb_001439_120 Hb_001439_120 Hb_000402_200--Hb_001439_120 Hb_001143_170 Hb_001143_170 Hb_000402_200--Hb_001143_170 Hb_010638_020 Hb_010638_020 Hb_000402_200--Hb_010638_020 Hb_018790_060 Hb_018790_060 Hb_000402_200--Hb_018790_060 Hb_022216_020 Hb_022216_020 Hb_000402_200--Hb_022216_020 Hb_000376_050 Hb_000376_050 Hb_021068_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_021068_050--Hb_002603_100 Hb_024835_030 Hb_024835_030 Hb_021068_050--Hb_024835_030 Hb_022250_040 Hb_022250_040 Hb_021068_050--Hb_022250_040 Hb_004012_010 Hb_004012_010 Hb_021068_050--Hb_004012_010 Hb_026198_050 Hb_026198_050 Hb_021068_050--Hb_026198_050 Hb_007919_050 Hb_007919_050 Hb_001439_120--Hb_007919_050 Hb_000556_080 Hb_000556_080 Hb_001439_120--Hb_000556_080 Hb_000029_030 Hb_000029_030 Hb_001439_120--Hb_000029_030 Hb_001439_120--Hb_010638_020 Hb_182026_020 Hb_182026_020 Hb_001439_120--Hb_182026_020 Hb_001439_120--Hb_021068_050 Hb_001143_170--Hb_021068_050 Hb_001143_170--Hb_026198_050 Hb_001143_170--Hb_007919_050 Hb_001008_060 Hb_001008_060 Hb_001143_170--Hb_001008_060 Hb_159558_030 Hb_159558_030 Hb_001143_170--Hb_159558_030 Hb_001221_410 Hb_001221_410 Hb_001143_170--Hb_001221_410 Hb_007575_040 Hb_007575_040 Hb_010638_020--Hb_007575_040 Hb_010638_020--Hb_182026_020 Hb_000186_240 Hb_000186_240 Hb_010638_020--Hb_000186_240 Hb_011224_080 Hb_011224_080 Hb_010638_020--Hb_011224_080 Hb_010638_020--Hb_000556_080 Hb_000061_420 Hb_000061_420 Hb_018790_060--Hb_000061_420 Hb_018790_060--Hb_022216_020 Hb_000009_160 Hb_000009_160 Hb_018790_060--Hb_000009_160 Hb_001123_230 Hb_001123_230 Hb_018790_060--Hb_001123_230 Hb_000224_170 Hb_000224_170 Hb_018790_060--Hb_000224_170 Hb_005147_090 Hb_005147_090 Hb_018790_060--Hb_005147_090 Hb_003976_010 Hb_003976_010 Hb_022216_020--Hb_003976_010 Hb_001377_290 Hb_001377_290 Hb_022216_020--Hb_001377_290 Hb_002835_410 Hb_002835_410 Hb_022216_020--Hb_002835_410 Hb_000174_090 Hb_000174_090 Hb_022216_020--Hb_000174_090 Hb_007426_230 Hb_007426_230 Hb_022216_020--Hb_007426_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14156 0.811479 0.430631 1.17832 3.32273 1.48486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79009 2.85578 3.12424 0.711637 0.286679

CAGE analysis