Hb_000403_100

Information

Type -
Description -
Location Contig403: 139446-143444
Sequence    

Annotation

kegg
ID fve:101296231
description ras-related protein Rab7-like
nr
ID XP_012075252.1
description PREDICTED: ras-related protein Rab7 [Jatropha curcas]
swissprot
ID Q43463
description Ras-related protein Rab7 OS=Glycine max PE=2 SV=1
trembl
ID A0A067KSN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09424 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000403_100 0.0 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
2 Hb_002598_040 0.0871006612 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
3 Hb_017700_030 0.0974604594 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
4 Hb_002035_130 0.0975858098 - - plasma membrane H+-ATPase [Hevea brasiliensis]
5 Hb_005396_030 0.1173907136 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001999_200 0.1267286715 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
7 Hb_114733_010 0.1271385406 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
8 Hb_000666_120 0.1376337148 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_068804_180 0.1414760667 - - PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
10 Hb_020301_010 0.1463623152 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000816_150 0.1467291583 - - oligopeptide transporter, putative [Ricinus communis]
12 Hb_007292_050 0.1473476871 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_000384_020 0.1477836174 - - sucrose phosphate syntase, putative [Ricinus communis]
14 Hb_002066_010 0.1495255348 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
15 Hb_000172_070 0.1498269759 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
16 Hb_173107_020 0.1523311846 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
17 Hb_000732_100 0.1568677001 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
18 Hb_000087_190 0.1578563734 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
19 Hb_001080_120 0.1654219323 - - Spotted leaf protein, putative [Ricinus communis]
20 Hb_000991_080 0.1662825367 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000403_100 Hb_000403_100 Hb_002598_040 Hb_002598_040 Hb_000403_100--Hb_002598_040 Hb_017700_030 Hb_017700_030 Hb_000403_100--Hb_017700_030 Hb_002035_130 Hb_002035_130 Hb_000403_100--Hb_002035_130 Hb_005396_030 Hb_005396_030 Hb_000403_100--Hb_005396_030 Hb_001999_200 Hb_001999_200 Hb_000403_100--Hb_001999_200 Hb_114733_010 Hb_114733_010 Hb_000403_100--Hb_114733_010 Hb_002598_040--Hb_017700_030 Hb_068804_180 Hb_068804_180 Hb_002598_040--Hb_068804_180 Hb_002598_040--Hb_001999_200 Hb_002598_040--Hb_114733_010 Hb_000816_150 Hb_000816_150 Hb_002598_040--Hb_000816_150 Hb_017700_030--Hb_000816_150 Hb_017700_030--Hb_114733_010 Hb_000384_020 Hb_000384_020 Hb_017700_030--Hb_000384_020 Hb_003582_030 Hb_003582_030 Hb_017700_030--Hb_003582_030 Hb_002035_130--Hb_005396_030 Hb_002035_130--Hb_002598_040 Hb_005643_080 Hb_005643_080 Hb_002035_130--Hb_005643_080 Hb_002035_130--Hb_017700_030 Hb_001080_120 Hb_001080_120 Hb_002035_130--Hb_001080_120 Hb_005396_030--Hb_017700_030 Hb_111985_090 Hb_111985_090 Hb_005396_030--Hb_111985_090 Hb_005396_030--Hb_005643_080 Hb_020301_010 Hb_020301_010 Hb_005396_030--Hb_020301_010 Hb_000479_060 Hb_000479_060 Hb_001999_200--Hb_000479_060 Hb_002762_100 Hb_002762_100 Hb_001999_200--Hb_002762_100 Hb_001999_200--Hb_017700_030 Hb_001675_310 Hb_001675_310 Hb_001999_200--Hb_001675_310 Hb_114733_010--Hb_000384_020 Hb_173107_020 Hb_173107_020 Hb_114733_010--Hb_173107_020 Hb_114733_010--Hb_000816_150 Hb_000991_080 Hb_000991_080 Hb_114733_010--Hb_000991_080 Hb_000732_100 Hb_000732_100 Hb_114733_010--Hb_000732_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.201714 3.46868 1.02897 6.64607 0.0474035 0.393008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.381442 1.93267

CAGE analysis