Hb_000404_040

Information

Type -
Description -
Location Contig404: 102710-123179
Sequence    

Annotation

kegg
ID rcu:RCOM_0890990
description hypothetical protein
nr
ID XP_002523639.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P55160
description Nck-associated protein 1-like OS=Homo sapiens GN=NCKAP1L PE=1 SV=3
trembl
ID B9SCC0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0890990 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein nap1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40090: 68886-122916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000404_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_052946_010 0.1083304634 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
3 Hb_001408_120 0.1154533287 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_013399_090 0.1227610927 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
5 Hb_001341_010 0.128522001 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
6 Hb_000025_500 0.1289160898 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_000731_290 0.1289416985 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000529_140 0.1334460587 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000167_120 0.1425215414 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
10 Hb_008511_140 0.1438609004 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
11 Hb_005523_010 0.1440903447 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
12 Hb_013749_050 0.1461067329 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
13 Hb_000186_080 0.1479761368 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
14 Hb_173808_010 0.1487669456 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
15 Hb_000589_380 0.1507289514 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
16 Hb_001109_160 0.1513205944 - - DNA binding protein, putative [Ricinus communis]
17 Hb_004041_030 0.1516516121 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
18 Hb_000640_260 0.1517523178 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
19 Hb_014006_010 0.1546736313 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
20 Hb_006846_080 0.1561848422 - - calnexin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000404_040 Hb_000404_040 Hb_052946_010 Hb_052946_010 Hb_000404_040--Hb_052946_010 Hb_001408_120 Hb_001408_120 Hb_000404_040--Hb_001408_120 Hb_013399_090 Hb_013399_090 Hb_000404_040--Hb_013399_090 Hb_001341_010 Hb_001341_010 Hb_000404_040--Hb_001341_010 Hb_000025_500 Hb_000025_500 Hb_000404_040--Hb_000025_500 Hb_000731_290 Hb_000731_290 Hb_000404_040--Hb_000731_290 Hb_052946_010--Hb_000731_290 Hb_001080_030 Hb_001080_030 Hb_052946_010--Hb_001080_030 Hb_052946_010--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_052946_010--Hb_004041_030 Hb_008511_140 Hb_008511_140 Hb_052946_010--Hb_008511_140 Hb_003029_140 Hb_003029_140 Hb_052946_010--Hb_003029_140 Hb_000186_080 Hb_000186_080 Hb_001408_120--Hb_000186_080 Hb_001408_120--Hb_013399_090 Hb_000008_410 Hb_000008_410 Hb_001408_120--Hb_000008_410 Hb_001408_120--Hb_001341_010 Hb_001408_120--Hb_052946_010 Hb_001726_100 Hb_001726_100 Hb_001408_120--Hb_001726_100 Hb_014006_010 Hb_014006_010 Hb_013399_090--Hb_014006_010 Hb_000340_360 Hb_000340_360 Hb_013399_090--Hb_000340_360 Hb_013399_090--Hb_000025_500 Hb_000320_360 Hb_000320_360 Hb_013399_090--Hb_000320_360 Hb_004586_090 Hb_004586_090 Hb_013399_090--Hb_004586_090 Hb_005181_050 Hb_005181_050 Hb_001341_010--Hb_005181_050 Hb_000167_120 Hb_000167_120 Hb_001341_010--Hb_000167_120 Hb_001341_010--Hb_000025_500 Hb_001366_270 Hb_001366_270 Hb_001341_010--Hb_001366_270 Hb_001341_010--Hb_000186_080 Hb_003490_050 Hb_003490_050 Hb_001341_010--Hb_003490_050 Hb_000025_500--Hb_000167_120 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_000025_500--Hb_004041_030 Hb_000731_290--Hb_001080_030 Hb_000731_290--Hb_000025_500 Hb_000731_290--Hb_001341_010 Hb_000731_290--Hb_000167_120 Hb_003549_050 Hb_003549_050 Hb_000731_290--Hb_003549_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0389 9.47609 6.81731 6.85507 3.62807 2.98896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43615 1.16961 7.42229 11.4 23.9319

CAGE analysis