Hb_000406_010

Information

Type -
Description -
Location Contig406: 197-914
Sequence    

Annotation

kegg
ID rcu:RCOM_1429700
description hypothetical protein
nr
ID XP_012089462.1
description PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JI05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23414 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40246: 1713-5548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_010 0.0 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
2 Hb_093385_010 0.1463857938 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
3 Hb_188411_010 0.1824714191 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
4 Hb_133605_010 0.189909295 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
5 Hb_000413_150 0.222253046 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
6 Hb_002343_030 0.2401917063 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000197_170 0.2525014258 - - ATP binding protein, putative [Ricinus communis]
8 Hb_005504_020 0.2538815778 - - -
9 Hb_005001_010 0.2603312561 - - GAST1 protein precursor, putative [Ricinus communis]
10 Hb_006286_010 0.2644017508 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
11 Hb_045985_010 0.2661377088 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
12 Hb_161023_010 0.2670819678 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
13 Hb_000302_070 0.2739730064 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
14 Hb_001862_080 0.2809452577 - - hypothetical protein RCOM_1154950 [Ricinus communis]
15 Hb_143933_010 0.2825032692 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_047560_010 0.2828276393 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
17 Hb_130739_010 0.288373696 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_000988_010 0.2900702903 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
19 Hb_003032_060 0.2918480367 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
20 Hb_014919_020 0.2952089087 - - -

Gene co-expression network

sample Hb_000406_010 Hb_000406_010 Hb_093385_010 Hb_093385_010 Hb_000406_010--Hb_093385_010 Hb_188411_010 Hb_188411_010 Hb_000406_010--Hb_188411_010 Hb_133605_010 Hb_133605_010 Hb_000406_010--Hb_133605_010 Hb_000413_150 Hb_000413_150 Hb_000406_010--Hb_000413_150 Hb_002343_030 Hb_002343_030 Hb_000406_010--Hb_002343_030 Hb_000197_170 Hb_000197_170 Hb_000406_010--Hb_000197_170 Hb_093385_010--Hb_002343_030 Hb_000988_010 Hb_000988_010 Hb_093385_010--Hb_000988_010 Hb_000039_080 Hb_000039_080 Hb_093385_010--Hb_000039_080 Hb_000105_110 Hb_000105_110 Hb_093385_010--Hb_000105_110 Hb_187739_010 Hb_187739_010 Hb_093385_010--Hb_187739_010 Hb_161023_010 Hb_161023_010 Hb_188411_010--Hb_161023_010 Hb_160233_020 Hb_160233_020 Hb_188411_010--Hb_160233_020 Hb_188411_010--Hb_133605_010 Hb_014919_020 Hb_014919_020 Hb_188411_010--Hb_014919_020 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010 Hb_031403_030 Hb_031403_030 Hb_133605_010--Hb_031403_030 Hb_003740_010 Hb_003740_010 Hb_133605_010--Hb_003740_010 Hb_002570_010 Hb_002570_010 Hb_133605_010--Hb_002570_010 Hb_133605_010--Hb_161023_010 Hb_000413_150--Hb_000197_170 Hb_000413_150--Hb_014919_020 Hb_000413_150--Hb_093385_010 Hb_000413_150--Hb_188411_010 Hb_115116_010 Hb_115116_010 Hb_000413_150--Hb_115116_010 Hb_002343_030--Hb_000105_110 Hb_000808_120 Hb_000808_120 Hb_002343_030--Hb_000808_120 Hb_005601_030 Hb_005601_030 Hb_002343_030--Hb_005601_030 Hb_053073_010 Hb_053073_010 Hb_002343_030--Hb_053073_010 Hb_003032_060 Hb_003032_060 Hb_000197_170--Hb_003032_060 Hb_005276_030 Hb_005276_030 Hb_000197_170--Hb_005276_030 Hb_047560_010 Hb_047560_010 Hb_000197_170--Hb_047560_010 Hb_096473_010 Hb_096473_010 Hb_000197_170--Hb_096473_010 Hb_000197_170--Hb_093385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0424656 0.0434123 0.0666551 0.132389 0.0427296 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis