Hb_000406_020

Information

Type -
Description -
Location Contig406: 1713-6235
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40246: 1713-5548 , PASA_asmbl_40247: 5882-5997 , PASA_asmbl_40248: 6235-6423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_020 0.0 - - -
2 Hb_001235_230 0.0672758743 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
3 Hb_003119_080 0.0698677846 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
4 Hb_000086_690 0.0738999333 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
5 Hb_000960_100 0.0760916197 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
6 Hb_002784_110 0.0768585281 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
7 Hb_000446_120 0.0794788584 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
8 Hb_148909_030 0.0795010523 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
9 Hb_005701_070 0.0800562086 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
10 Hb_003284_030 0.0820144772 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
11 Hb_002022_070 0.082337146 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
12 Hb_001401_060 0.0830329683 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
13 Hb_000740_100 0.0835014736 - - calpain, putative [Ricinus communis]
14 Hb_000788_070 0.0837573982 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
15 Hb_000261_030 0.0846762484 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
16 Hb_008024_030 0.0852562779 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
17 Hb_002784_010 0.0855474996 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
18 Hb_006295_020 0.0863403794 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
19 Hb_000025_320 0.0865230293 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
20 Hb_005539_090 0.0873959777 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_020 Hb_000406_020 Hb_001235_230 Hb_001235_230 Hb_000406_020--Hb_001235_230 Hb_003119_080 Hb_003119_080 Hb_000406_020--Hb_003119_080 Hb_000086_690 Hb_000086_690 Hb_000406_020--Hb_000086_690 Hb_000960_100 Hb_000960_100 Hb_000406_020--Hb_000960_100 Hb_002784_110 Hb_002784_110 Hb_000406_020--Hb_002784_110 Hb_000446_120 Hb_000446_120 Hb_000406_020--Hb_000446_120 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_001235_230--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_001235_230--Hb_000176_130 Hb_002044_170 Hb_002044_170 Hb_001235_230--Hb_002044_170 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_000035_410 Hb_000035_410 Hb_001235_230--Hb_000035_410 Hb_002909_120 Hb_002909_120 Hb_003119_080--Hb_002909_120 Hb_011609_150 Hb_011609_150 Hb_003119_080--Hb_011609_150 Hb_003119_080--Hb_000086_690 Hb_003211_040 Hb_003211_040 Hb_003119_080--Hb_003211_040 Hb_000046_190 Hb_000046_190 Hb_003119_080--Hb_000046_190 Hb_009486_170 Hb_009486_170 Hb_000086_690--Hb_009486_170 Hb_001133_030 Hb_001133_030 Hb_000086_690--Hb_001133_030 Hb_000183_050 Hb_000183_050 Hb_000086_690--Hb_000183_050 Hb_001401_060 Hb_001401_060 Hb_000086_690--Hb_001401_060 Hb_000086_690--Hb_011202_020 Hb_002615_090 Hb_002615_090 Hb_000960_100--Hb_002615_090 Hb_004108_100 Hb_004108_100 Hb_000960_100--Hb_004108_100 Hb_002022_070 Hb_002022_070 Hb_000960_100--Hb_002022_070 Hb_000025_320 Hb_000025_320 Hb_000960_100--Hb_000025_320 Hb_002235_300 Hb_002235_300 Hb_000960_100--Hb_002235_300 Hb_000960_100--Hb_001235_230 Hb_002784_110--Hb_000446_120 Hb_025194_040 Hb_025194_040 Hb_002784_110--Hb_025194_040 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_000035_290 Hb_000035_290 Hb_002784_110--Hb_000035_290 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_005701_070 Hb_005701_070 Hb_000446_120--Hb_005701_070 Hb_030627_060 Hb_030627_060 Hb_000446_120--Hb_030627_060 Hb_002329_040 Hb_002329_040 Hb_000446_120--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_000446_120--Hb_000740_100 Hb_000446_120--Hb_025194_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4069 22.4052 8.88693 8.97665 19.601 21.5123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.97862 4.5264 11.7502 16.8746 21.0026

CAGE analysis