Hb_000406_040

Information

Type -
Description -
Location Contig406: 31184-35838
Sequence    

Annotation

kegg
ID rcu:RCOM_1429590
description Protein FRIGIDA, putative
nr
ID XP_012089467.1
description PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
swissprot
ID Q5XV31
description FRIGIDA-like protein 5 OS=Arabidopsis thaliana GN=FRL5 PE=2 SV=1
trembl
ID B9REX4
description Protein FRIGIDA, putative OS=Ricinus communis GN=RCOM_1429590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40251: 31214-35865
cDNA
(Sanger)
(ID:Location)		 048_G21.ab1: 35052-35865

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
2 Hb_001083_030 0.1105340997 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
3 Hb_012132_030 0.1144444184 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
4 Hb_165350_010 0.1151839396 - - unnamed protein product [Triticum aestivum]
5 Hb_000487_100 0.1208978875 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
6 Hb_017168_010 0.1228811982 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003097_190 0.1231880303 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
8 Hb_004656_060 0.1267841831 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
9 Hb_000755_080 0.1275878609 - - hypothetical protein RCOM_1016710 [Ricinus communis]
10 Hb_004512_020 0.1285573661 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
11 Hb_011344_010 0.1300375916 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
12 Hb_000532_020 0.1318619302 - - beta-tubulin [Bouteloua eriopoda]
13 Hb_000270_780 0.1329897973 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
14 Hb_000107_530 0.1341744148 - - calcium-dependent protein kinase, putative [Ricinus communis]
15 Hb_000107_100 0.1341955298 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
16 Hb_004678_020 0.134746374 - - PREDICTED: protein YIF1B [Jatropha curcas]
17 Hb_000946_120 0.1349348443 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000152_560 0.1356335784 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
19 Hb_140171_010 0.1370180403 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
20 Hb_002997_100 0.1373321858 - - hypothetical protein JCGZ_19555 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_040 Hb_000406_040 Hb_001083_030 Hb_001083_030 Hb_000406_040--Hb_001083_030 Hb_012132_030 Hb_012132_030 Hb_000406_040--Hb_012132_030 Hb_165350_010 Hb_165350_010 Hb_000406_040--Hb_165350_010 Hb_000487_100 Hb_000487_100 Hb_000406_040--Hb_000487_100 Hb_017168_010 Hb_017168_010 Hb_000406_040--Hb_017168_010 Hb_003097_190 Hb_003097_190 Hb_000406_040--Hb_003097_190 Hb_025669_020 Hb_025669_020 Hb_001083_030--Hb_025669_020 Hb_102129_070 Hb_102129_070 Hb_001083_030--Hb_102129_070 Hb_000946_120 Hb_000946_120 Hb_001083_030--Hb_000946_120 Hb_000032_490 Hb_000032_490 Hb_001083_030--Hb_000032_490 Hb_000365_140 Hb_000365_140 Hb_001083_030--Hb_000365_140 Hb_000107_530 Hb_000107_530 Hb_001083_030--Hb_000107_530 Hb_012132_030--Hb_000946_120 Hb_012132_030--Hb_017168_010 Hb_010222_080 Hb_010222_080 Hb_012132_030--Hb_010222_080 Hb_001541_260 Hb_001541_260 Hb_012132_030--Hb_001541_260 Hb_144787_030 Hb_144787_030 Hb_012132_030--Hb_144787_030 Hb_001136_100 Hb_001136_100 Hb_012132_030--Hb_001136_100 Hb_000270_780 Hb_000270_780 Hb_165350_010--Hb_000270_780 Hb_000861_070 Hb_000861_070 Hb_165350_010--Hb_000861_070 Hb_011612_010 Hb_011612_010 Hb_165350_010--Hb_011612_010 Hb_002508_020 Hb_002508_020 Hb_165350_010--Hb_002508_020 Hb_000592_080 Hb_000592_080 Hb_165350_010--Hb_000592_080 Hb_012193_010 Hb_012193_010 Hb_165350_010--Hb_012193_010 Hb_003125_060 Hb_003125_060 Hb_000487_100--Hb_003125_060 Hb_080147_030 Hb_080147_030 Hb_000487_100--Hb_080147_030 Hb_000685_080 Hb_000685_080 Hb_000487_100--Hb_000685_080 Hb_005725_020 Hb_005725_020 Hb_000487_100--Hb_005725_020 Hb_000740_070 Hb_000740_070 Hb_000487_100--Hb_000740_070 Hb_005399_020 Hb_005399_020 Hb_000487_100--Hb_005399_020 Hb_000107_100 Hb_000107_100 Hb_017168_010--Hb_000107_100 Hb_017168_010--Hb_010222_080 Hb_000340_510 Hb_000340_510 Hb_017168_010--Hb_000340_510 Hb_002026_110 Hb_002026_110 Hb_017168_010--Hb_002026_110 Hb_002942_220 Hb_002942_220 Hb_017168_010--Hb_002942_220 Hb_010068_030 Hb_010068_030 Hb_003097_190--Hb_010068_030 Hb_012654_010 Hb_012654_010 Hb_003097_190--Hb_012654_010 Hb_000152_560 Hb_000152_560 Hb_003097_190--Hb_000152_560 Hb_001057_010 Hb_001057_010 Hb_003097_190--Hb_001057_010 Hb_002890_030 Hb_002890_030 Hb_003097_190--Hb_002890_030 Hb_003097_190--Hb_000861_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.632 18.1708 14.0866 8.23696 72.024 31.6799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8674 11.6199 31.8875 15.313 5.36011

CAGE analysis