Hb_000406_080

Information

Type -
Description -
Location Contig406: 76752-78080
Sequence    

Annotation

kegg
ID rcu:RCOM_1429540
description trafficking protein particle complex subunit 6b, putative
nr
ID XP_012089155.1
description PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
swissprot
ID Q86SZ2
description Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1
trembl
ID A0A067JUC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23423 PE=4 SV=1
Gene Ontology
ID GO:0009737
description trafficking protein particle complex subunit 6b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40257: 75414-78078 , PASA_asmbl_40259: 76738-76894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_080 0.0 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
2 Hb_000417_040 0.0521485202 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
3 Hb_000329_110 0.0805102493 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
4 Hb_001225_080 0.0815397814 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]
5 Hb_001057_040 0.082050197 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
6 Hb_000645_090 0.084958431 - - conserved hypothetical protein [Ricinus communis]
7 Hb_181385_010 0.0851787263 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
8 Hb_003108_020 0.0866088747 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
9 Hb_007101_300 0.0867407992 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
10 Hb_001703_060 0.0879258815 - - protein kinase, putative [Ricinus communis]
11 Hb_003389_040 0.0881094766 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
12 Hb_000331_200 0.091077097 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
13 Hb_000125_080 0.091242733 transcription factor TF Family: mTERF -
14 Hb_001215_040 0.0914058061 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000032_380 0.0926576933 - - conserved hypothetical protein [Ricinus communis]
16 Hb_092337_010 0.0927832547 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
17 Hb_003414_050 0.0930387082 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
18 Hb_000030_030 0.0950696979 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
19 Hb_011344_120 0.0953839138 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
20 Hb_000477_060 0.0968994574 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_000406_080 Hb_000406_080 Hb_000417_040 Hb_000417_040 Hb_000406_080--Hb_000417_040 Hb_000329_110 Hb_000329_110 Hb_000406_080--Hb_000329_110 Hb_001225_080 Hb_001225_080 Hb_000406_080--Hb_001225_080 Hb_001057_040 Hb_001057_040 Hb_000406_080--Hb_001057_040 Hb_000645_090 Hb_000645_090 Hb_000406_080--Hb_000645_090 Hb_181385_010 Hb_181385_010 Hb_000406_080--Hb_181385_010 Hb_003389_040 Hb_003389_040 Hb_000417_040--Hb_003389_040 Hb_005846_040 Hb_005846_040 Hb_000417_040--Hb_005846_040 Hb_000032_380 Hb_000032_380 Hb_000417_040--Hb_000032_380 Hb_007101_300 Hb_007101_300 Hb_000417_040--Hb_007101_300 Hb_000032_270 Hb_000032_270 Hb_000417_040--Hb_000032_270 Hb_000805_240 Hb_000805_240 Hb_000329_110--Hb_000805_240 Hb_004696_080 Hb_004696_080 Hb_000329_110--Hb_004696_080 Hb_000329_110--Hb_000645_090 Hb_000030_030 Hb_000030_030 Hb_000329_110--Hb_000030_030 Hb_089032_030 Hb_089032_030 Hb_000329_110--Hb_089032_030 Hb_001703_060 Hb_001703_060 Hb_001225_080--Hb_001703_060 Hb_001225_080--Hb_007101_300 Hb_001225_080--Hb_000030_030 Hb_000331_200 Hb_000331_200 Hb_001225_080--Hb_000331_200 Hb_001225_080--Hb_000032_380 Hb_000701_100 Hb_000701_100 Hb_001057_040--Hb_000701_100 Hb_009051_030 Hb_009051_030 Hb_001057_040--Hb_009051_030 Hb_009615_070 Hb_009615_070 Hb_001057_040--Hb_009615_070 Hb_018124_010 Hb_018124_010 Hb_001057_040--Hb_018124_010 Hb_008695_050 Hb_008695_050 Hb_001057_040--Hb_008695_050 Hb_002481_080 Hb_002481_080 Hb_000645_090--Hb_002481_080 Hb_001377_510 Hb_001377_510 Hb_000645_090--Hb_001377_510 Hb_155159_020 Hb_155159_020 Hb_000645_090--Hb_155159_020 Hb_022115_020 Hb_022115_020 Hb_000645_090--Hb_022115_020 Hb_000477_060 Hb_000477_060 Hb_000645_090--Hb_000477_060 Hb_005188_080 Hb_005188_080 Hb_000645_090--Hb_005188_080 Hb_000125_080 Hb_000125_080 Hb_181385_010--Hb_000125_080 Hb_004473_040 Hb_004473_040 Hb_181385_010--Hb_004473_040 Hb_002983_050 Hb_002983_050 Hb_181385_010--Hb_002983_050 Hb_181385_010--Hb_000417_040 Hb_181385_010--Hb_001057_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.7858 34.9309 19.1147 66.5036 32.9782 44.4861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.3075 73.988 46.6988 34.7867 21.1022

CAGE analysis