Hb_000406_090

Information

Type -
Description -
Location Contig406: 79332-81688
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04590g
description Cu/Zn superoxide dismutase family protein
nr
ID ABK92960.1
description unknown [Populus trichocarpa]
swissprot
ID Q07796
description Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2
trembl
ID A3FM77
description Superoxide dismutase [Cu-Zn] OS=Populus trichocarpa GN=SOD PE=2 SV=1
Gene Ontology
ID GO:0016209
description superoxide dismutase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40260: 79252-81865 , PASA_asmbl_40261: 79910-80369
cDNA
(Sanger)
(ID:Location)		 026_J17.ab1: 79551-81862 , 045_F11.ab1: 79508-81860 , 051_C13.ab1: 79499-80875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_090 0.0 - - unknown [Populus trichocarpa]
2 Hb_008749_020 0.1302450993 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001677_100 0.1328807998 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
4 Hb_004297_090 0.1340257179 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
5 Hb_002093_050 0.1419632956 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
6 Hb_001018_060 0.1422291549 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
7 Hb_000679_110 0.1472983357 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
8 Hb_000803_120 0.1475244103 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
9 Hb_004883_020 0.1477564819 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
10 Hb_007575_030 0.1485082645 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
11 Hb_002235_050 0.1498444413 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
12 Hb_001434_020 0.1514517786 - - hypothetical protein RCOM_0841800 [Ricinus communis]
13 Hb_004746_010 0.1531063804 - - aldo/keto reductase, putative [Ricinus communis]
14 Hb_153257_010 0.1532333116 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
15 Hb_000365_200 0.1582079585 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
16 Hb_000248_100 0.1602004137 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
17 Hb_000309_030 0.1613315359 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
18 Hb_000230_530 0.1622024576 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002010_090 0.1636074465 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
20 Hb_000042_380 0.1651921354 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_090 Hb_000406_090 Hb_008749_020 Hb_008749_020 Hb_000406_090--Hb_008749_020 Hb_001677_100 Hb_001677_100 Hb_000406_090--Hb_001677_100 Hb_004297_090 Hb_004297_090 Hb_000406_090--Hb_004297_090 Hb_002093_050 Hb_002093_050 Hb_000406_090--Hb_002093_050 Hb_001018_060 Hb_001018_060 Hb_000406_090--Hb_001018_060 Hb_000679_110 Hb_000679_110 Hb_000406_090--Hb_000679_110 Hb_000625_030 Hb_000625_030 Hb_008749_020--Hb_000625_030 Hb_004041_100 Hb_004041_100 Hb_008749_020--Hb_004041_100 Hb_000907_150 Hb_000907_150 Hb_008749_020--Hb_000907_150 Hb_000720_090 Hb_000720_090 Hb_008749_020--Hb_000720_090 Hb_001500_070 Hb_001500_070 Hb_008749_020--Hb_001500_070 Hb_001677_100--Hb_004297_090 Hb_001434_020 Hb_001434_020 Hb_001677_100--Hb_001434_020 Hb_009296_020 Hb_009296_020 Hb_001677_100--Hb_009296_020 Hb_000260_400 Hb_000260_400 Hb_001677_100--Hb_000260_400 Hb_011214_110 Hb_011214_110 Hb_001677_100--Hb_011214_110 Hb_002849_050 Hb_002849_050 Hb_001677_100--Hb_002849_050 Hb_000365_200 Hb_000365_200 Hb_004297_090--Hb_000365_200 Hb_003683_130 Hb_003683_130 Hb_004297_090--Hb_003683_130 Hb_004297_090--Hb_000260_400 Hb_004883_020 Hb_004883_020 Hb_004297_090--Hb_004883_020 Hb_004297_090--Hb_009296_020 Hb_153257_010 Hb_153257_010 Hb_002093_050--Hb_153257_010 Hb_004746_010 Hb_004746_010 Hb_002093_050--Hb_004746_010 Hb_098315_090 Hb_098315_090 Hb_002093_050--Hb_098315_090 Hb_000823_010 Hb_000823_010 Hb_002093_050--Hb_000823_010 Hb_000803_120 Hb_000803_120 Hb_002093_050--Hb_000803_120 Hb_002808_020 Hb_002808_020 Hb_001018_060--Hb_002808_020 Hb_000661_220 Hb_000661_220 Hb_001018_060--Hb_000661_220 Hb_000849_080 Hb_000849_080 Hb_001018_060--Hb_000849_080 Hb_003227_010 Hb_003227_010 Hb_001018_060--Hb_003227_010 Hb_002392_020 Hb_002392_020 Hb_001018_060--Hb_002392_020 Hb_001018_060--Hb_001677_100 Hb_001195_220 Hb_001195_220 Hb_000679_110--Hb_001195_220 Hb_002235_050 Hb_002235_050 Hb_000679_110--Hb_002235_050 Hb_010872_050 Hb_010872_050 Hb_000679_110--Hb_010872_050 Hb_007576_140 Hb_007576_140 Hb_000679_110--Hb_007576_140 Hb_129204_020 Hb_129204_020 Hb_000679_110--Hb_129204_020 Hb_003659_010 Hb_003659_010 Hb_000679_110--Hb_003659_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.3259 108.654 380.778 241.699 90.563 42.4703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0912 44.5302 18.9859 486.366 198.917

CAGE analysis