Hb_000406_110

Information

Type -
Description -
Location Contig406: 86684-94021
Sequence    

Annotation

kegg
ID rcu:RCOM_1429410
description hypothetical protein
nr
ID XP_012089162.1
description PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
swissprot
ID Q791F6
description Transmembrane protein adipocyte-associated 1 OS=Rattus norvegicus GN=Tpra1 PE=2 SV=1
trembl
ID A0A067JVN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23427 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein adipocyte-associated 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40262: 86638-94053
cDNA
(Sanger)
(ID:Location)		 017_O14.ab1: 86716-88507 , 025_G12.ab1: 86638-88490

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_110 0.0 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
2 Hb_002400_140 0.0816637499 - - protein kinase, putative [Ricinus communis]
3 Hb_144744_010 0.0838317927 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
4 Hb_004648_050 0.0848963989 - - ring finger protein, putative [Ricinus communis]
5 Hb_000059_020 0.0853380842 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
6 Hb_032808_030 0.0862501943 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_006573_210 0.0877052409 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
8 Hb_000105_040 0.0885267484 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
9 Hb_001935_140 0.0895062042 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
10 Hb_011287_050 0.0895472774 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
11 Hb_000487_380 0.0947407757 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
12 Hb_000479_240 0.0953194365 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
13 Hb_003581_170 0.0954403579 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
14 Hb_006910_060 0.0962591384 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
15 Hb_003604_050 0.0977742545 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
16 Hb_009028_010 0.0991774884 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
17 Hb_004994_090 0.0995285355 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
18 Hb_005568_040 0.1005186966 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
19 Hb_002960_080 0.101522737 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
20 Hb_000363_370 0.1023176586 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_110 Hb_000406_110 Hb_002400_140 Hb_002400_140 Hb_000406_110--Hb_002400_140 Hb_144744_010 Hb_144744_010 Hb_000406_110--Hb_144744_010 Hb_004648_050 Hb_004648_050 Hb_000406_110--Hb_004648_050 Hb_000059_020 Hb_000059_020 Hb_000406_110--Hb_000059_020 Hb_032808_030 Hb_032808_030 Hb_000406_110--Hb_032808_030 Hb_006573_210 Hb_006573_210 Hb_000406_110--Hb_006573_210 Hb_003581_170 Hb_003581_170 Hb_002400_140--Hb_003581_170 Hb_000105_040 Hb_000105_040 Hb_002400_140--Hb_000105_040 Hb_000836_020 Hb_000836_020 Hb_002400_140--Hb_000836_020 Hb_003604_050 Hb_003604_050 Hb_002400_140--Hb_003604_050 Hb_002400_140--Hb_004648_050 Hb_188063_010 Hb_188063_010 Hb_002400_140--Hb_188063_010 Hb_009028_010 Hb_009028_010 Hb_144744_010--Hb_009028_010 Hb_000236_410 Hb_000236_410 Hb_144744_010--Hb_000236_410 Hb_001935_140 Hb_001935_140 Hb_144744_010--Hb_001935_140 Hb_004371_010 Hb_004371_010 Hb_144744_010--Hb_004371_010 Hb_003060_090 Hb_003060_090 Hb_144744_010--Hb_003060_090 Hb_002960_080 Hb_002960_080 Hb_004648_050--Hb_002960_080 Hb_001006_100 Hb_001006_100 Hb_004648_050--Hb_001006_100 Hb_000069_480 Hb_000069_480 Hb_004648_050--Hb_000069_480 Hb_004648_050--Hb_009028_010 Hb_000862_040 Hb_000862_040 Hb_000059_020--Hb_000862_040 Hb_000940_200 Hb_000940_200 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330 Hb_032808_030--Hb_000236_410 Hb_000213_120 Hb_000213_120 Hb_032808_030--Hb_000213_120 Hb_000925_140 Hb_000925_140 Hb_032808_030--Hb_000925_140 Hb_002662_020 Hb_002662_020 Hb_032808_030--Hb_002662_020 Hb_032808_030--Hb_000105_040 Hb_001105_160 Hb_001105_160 Hb_032808_030--Hb_001105_160 Hb_006910_060 Hb_006910_060 Hb_006573_210--Hb_006910_060 Hb_011849_040 Hb_011849_040 Hb_006573_210--Hb_011849_040 Hb_011287_050 Hb_011287_050 Hb_006573_210--Hb_011287_050 Hb_000487_380 Hb_000487_380 Hb_006573_210--Hb_000487_380 Hb_015026_130 Hb_015026_130 Hb_006573_210--Hb_015026_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4692 75.1476 17.3778 41.8737 26.9827 43.5576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.773 14.6296 14.336 36.2227 23.6822

CAGE analysis