Hb_000406_120

Information

Type -
Description -
Location Contig406: 94285-96953
Sequence    

Annotation

kegg
ID rcu:RCOM_1429400
description acyl carrier protein (EC:1.3.1.74)
nr
ID NP_001295608.1
description acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
swissprot
ID P93092
description Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1
trembl
ID A0A067JUC8
description Acyl carrier protein OS=Jatropha curcas GN=ACP PE=2 SV=1
Gene Ontology
ID GO:0016491
description acyl carrier protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40263: 94299-96953
cDNA
(Sanger)
(ID:Location)		 008_G22.ab1: 94344-96953 , 023_J17.ab1: 94345-96953 , 024_J23.ab1: 94345-96953 , 029_N08.ab1: 94345-96943 , 049_E12.ab1: 94344-96953

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_120 0.0 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
2 Hb_000125_030 0.0808473011 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
3 Hb_000141_020 0.0950053915 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
4 Hb_002045_180 0.1036430588 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
5 Hb_006647_020 0.1092045201 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
6 Hb_010407_180 0.1099884144 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
7 Hb_002056_060 0.1122188795 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
8 Hb_000592_020 0.1137236566 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
9 Hb_001314_020 0.1140157332 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
10 Hb_002163_020 0.1146691557 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
11 Hb_001199_050 0.1148218073 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
12 Hb_029866_020 0.1169956914 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
13 Hb_003504_020 0.1183040049 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
14 Hb_005569_020 0.1211510106 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002301_230 0.1224469547 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
16 Hb_000110_320 0.1239312113 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
17 Hb_007429_030 0.1239532724 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
18 Hb_001956_070 0.1240768173 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
19 Hb_000789_220 0.126883337 - - phosphofructokinase [Hevea brasiliensis]
20 Hb_000196_080 0.1269515307 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_120 Hb_000406_120 Hb_000125_030 Hb_000125_030 Hb_000406_120--Hb_000125_030 Hb_000141_020 Hb_000141_020 Hb_000406_120--Hb_000141_020 Hb_002045_180 Hb_002045_180 Hb_000406_120--Hb_002045_180 Hb_006647_020 Hb_006647_020 Hb_000406_120--Hb_006647_020 Hb_010407_180 Hb_010407_180 Hb_000406_120--Hb_010407_180 Hb_002056_060 Hb_002056_060 Hb_000406_120--Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_003504_020 Hb_003504_020 Hb_000125_030--Hb_003504_020 Hb_000125_030--Hb_000141_020 Hb_000125_030--Hb_010407_180 Hb_000141_020--Hb_003504_020 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_001159_080 Hb_001159_080 Hb_000141_020--Hb_001159_080 Hb_001314_020 Hb_001314_020 Hb_002045_180--Hb_001314_020 Hb_000592_020 Hb_000592_020 Hb_002045_180--Hb_000592_020 Hb_002045_180--Hb_000141_020 Hb_007429_030 Hb_007429_030 Hb_002045_180--Hb_007429_030 Hb_002110_020 Hb_002110_020 Hb_002045_180--Hb_002110_020 Hb_003787_020 Hb_003787_020 Hb_006647_020--Hb_003787_020 Hb_002006_090 Hb_002006_090 Hb_006647_020--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_006647_020--Hb_000111_360 Hb_006647_020--Hb_002056_060 Hb_000116_010 Hb_000116_010 Hb_006647_020--Hb_000116_010 Hb_000120_960 Hb_000120_960 Hb_010407_180--Hb_000120_960 Hb_001279_340 Hb_001279_340 Hb_010407_180--Hb_001279_340 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_005928_100 Hb_005928_100 Hb_010407_180--Hb_005928_100 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_000120_680 Hb_000120_680 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
183.1 140.553 98.0851 77.9104 60.8964 113.317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
285.603 277.136 466.001 115.525 43.3592

CAGE analysis