Hb_000406_130

Information

Type -
Description -
Location Contig406: 103645-109630
Sequence    

Annotation

kegg
ID rcu:RCOM_1429290
description vesicle-associated membrane protein, putative
nr
ID XP_002512284.1
description vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID B9DHD7
description Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1
trembl
ID B9REW5
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_1429290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40264: 101155-108933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_130 0.0 - - vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_000471_110 0.0619863014 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
3 Hb_001352_020 0.070317697 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
4 Hb_000479_140 0.0745951744 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
5 Hb_008176_010 0.0772968708 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
6 Hb_000116_260 0.0783104125 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
7 Hb_003376_250 0.0818832867 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
8 Hb_010344_050 0.0875768149 - - Adagio 1 -like protein [Gossypium arboreum]
9 Hb_007416_060 0.0877564225 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
10 Hb_000020_120 0.0919616734 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
11 Hb_008566_030 0.093825518 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
12 Hb_005488_200 0.1002824172 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
13 Hb_000497_300 0.1004053993 - - peroxisomal membrane protein [Hevea brasiliensis]
14 Hb_002043_040 0.101606322 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
15 Hb_079312_010 0.1023588082 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001307_030 0.1046905725 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
17 Hb_008725_170 0.1071526905 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
18 Hb_001242_130 0.1075800465 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
19 Hb_007044_050 0.1096259602 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
20 Hb_001898_080 0.1109182668 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_130 Hb_000406_130 Hb_000471_110 Hb_000471_110 Hb_000406_130--Hb_000471_110 Hb_001352_020 Hb_001352_020 Hb_000406_130--Hb_001352_020 Hb_000479_140 Hb_000479_140 Hb_000406_130--Hb_000479_140 Hb_008176_010 Hb_008176_010 Hb_000406_130--Hb_008176_010 Hb_000116_260 Hb_000116_260 Hb_000406_130--Hb_000116_260 Hb_003376_250 Hb_003376_250 Hb_000406_130--Hb_003376_250 Hb_000471_110--Hb_000479_140 Hb_000471_110--Hb_000116_260 Hb_000471_110--Hb_001352_020 Hb_000497_300 Hb_000497_300 Hb_000471_110--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000471_110--Hb_164010_030 Hb_001352_020--Hb_000116_260 Hb_001352_020--Hb_000497_300 Hb_001789_150 Hb_001789_150 Hb_001352_020--Hb_001789_150 Hb_010344_050 Hb_010344_050 Hb_001352_020--Hb_010344_050 Hb_000020_120 Hb_000020_120 Hb_000479_140--Hb_000020_120 Hb_001242_130 Hb_001242_130 Hb_000479_140--Hb_001242_130 Hb_000479_140--Hb_010344_050 Hb_000479_140--Hb_000497_300 Hb_006275_070 Hb_006275_070 Hb_008176_010--Hb_006275_070 Hb_008176_010--Hb_000471_110 Hb_000069_210 Hb_000069_210 Hb_008176_010--Hb_000069_210 Hb_001936_130 Hb_001936_130 Hb_008176_010--Hb_001936_130 Hb_008176_010--Hb_001352_020 Hb_000116_260--Hb_000497_300 Hb_007416_060 Hb_007416_060 Hb_000116_260--Hb_007416_060 Hb_000116_260--Hb_164010_030 Hb_000982_080 Hb_000982_080 Hb_003376_250--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_003376_250--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_003376_250--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_003376_250--Hb_001195_200 Hb_000327_180 Hb_000327_180 Hb_003376_250--Hb_000327_180 Hb_003376_250--Hb_007416_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.61901 7.25709 4.84579 16.0721 7.29253 7.69636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.99029 16.2949 23.4756 14.9103 21.0665

CAGE analysis