Hb_000406_150

Information

Type -
Description -
Location Contig406: 113705-119521
Sequence    

Annotation

kegg
ID rcu:RCOM_1429270
description sodium/hydrogen exchanger, putative
nr
ID XP_002512282.1
description sodium/hydrogen exchanger, putative [Ricinus communis]
swissprot
ID Q56XP4
description Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=2 SV=2
trembl
ID B9REW3
description Sodium/hydrogen exchanger OS=Ricinus communis GN=RCOM_1429270 PE=3 SV=1
Gene Ontology
ID GO:0005774
description na+ h+ antiporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40266: 119127-119332 , PASA_asmbl_40267: 113746-119497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_150 0.0 - - sodium/hydrogen exchanger, putative [Ricinus communis]
2 Hb_000035_390 0.1068443796 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
3 Hb_004607_070 0.108246237 - - integral membrane protein, putative [Ricinus communis]
4 Hb_004880_150 0.1103171243 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
5 Hb_002928_200 0.1145896821 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
6 Hb_042474_010 0.1174506316 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
7 Hb_003776_060 0.1208923456 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
8 Hb_009615_060 0.1210948463 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
9 Hb_005648_010 0.1212272389 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
10 Hb_005914_140 0.121904593 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
11 Hb_001221_020 0.1222827391 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
12 Hb_001799_060 0.1231751356 - - Rab6 [Hevea brasiliensis]
13 Hb_001951_060 0.1257225922 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
14 Hb_002811_100 0.1257835688 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
15 Hb_016347_010 0.1260186951 - - protein transporter, putative [Ricinus communis]
16 Hb_001510_020 0.1277736523 - - Diaminopimelate epimerase, putative [Ricinus communis]
17 Hb_000800_090 0.1284546314 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
18 Hb_000251_030 0.128610749 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
19 Hb_034083_020 0.1286502942 - - conserved hypothetical protein [Ricinus communis]
20 Hb_132880_040 0.1293246679 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_150 Hb_000406_150 Hb_000035_390 Hb_000035_390 Hb_000406_150--Hb_000035_390 Hb_004607_070 Hb_004607_070 Hb_000406_150--Hb_004607_070 Hb_004880_150 Hb_004880_150 Hb_000406_150--Hb_004880_150 Hb_002928_200 Hb_002928_200 Hb_000406_150--Hb_002928_200 Hb_042474_010 Hb_042474_010 Hb_000406_150--Hb_042474_010 Hb_003776_060 Hb_003776_060 Hb_000406_150--Hb_003776_060 Hb_132880_040 Hb_132880_040 Hb_000035_390--Hb_132880_040 Hb_005648_010 Hb_005648_010 Hb_000035_390--Hb_005648_010 Hb_000185_220 Hb_000185_220 Hb_000035_390--Hb_000185_220 Hb_000035_390--Hb_004607_070 Hb_000046_170 Hb_000046_170 Hb_000035_390--Hb_000046_170 Hb_000367_090 Hb_000367_090 Hb_000035_390--Hb_000367_090 Hb_004607_070--Hb_000046_170 Hb_020390_010 Hb_020390_010 Hb_004607_070--Hb_020390_010 Hb_000928_190 Hb_000928_190 Hb_004607_070--Hb_000928_190 Hb_004607_070--Hb_005648_010 Hb_009711_050 Hb_009711_050 Hb_004607_070--Hb_009711_050 Hb_001221_020 Hb_001221_020 Hb_004880_150--Hb_001221_020 Hb_004880_150--Hb_003776_060 Hb_002477_290 Hb_002477_290 Hb_004880_150--Hb_002477_290 Hb_002811_100 Hb_002811_100 Hb_004880_150--Hb_002811_100 Hb_000025_190 Hb_000025_190 Hb_004880_150--Hb_000025_190 Hb_004880_150--Hb_005648_010 Hb_000768_160 Hb_000768_160 Hb_002928_200--Hb_000768_160 Hb_002631_130 Hb_002631_130 Hb_002928_200--Hb_002631_130 Hb_002477_040 Hb_002477_040 Hb_002928_200--Hb_002477_040 Hb_012678_020 Hb_012678_020 Hb_002928_200--Hb_012678_020 Hb_001006_270 Hb_001006_270 Hb_002928_200--Hb_001006_270 Hb_012760_040 Hb_012760_040 Hb_042474_010--Hb_012760_040 Hb_000190_090 Hb_000190_090 Hb_042474_010--Hb_000190_090 Hb_042474_010--Hb_004880_150 Hb_042474_010--Hb_001221_020 Hb_006916_110 Hb_006916_110 Hb_042474_010--Hb_006916_110 Hb_016347_010 Hb_016347_010 Hb_042474_010--Hb_016347_010 Hb_003776_060--Hb_002811_100 Hb_000327_250 Hb_000327_250 Hb_003776_060--Hb_000327_250 Hb_003544_030 Hb_003544_030 Hb_003776_060--Hb_003544_030 Hb_023001_040 Hb_023001_040 Hb_003776_060--Hb_023001_040 Hb_003776_060--Hb_001221_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.93582 11.4233 7.70249 25.0074 7.10267 3.99482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.96426 13.8163 8.27648 27.3625 18.5139

CAGE analysis