Hb_000406_200

Information

Type -
Description -
Location Contig406: 169921-180826
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04670g
description eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein
nr
ID XP_012089173.1
description PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
swissprot
ID P56287
description Probable translation initiation factor eIF-2B subunit epsilon OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif225 PE=1 SV=1
trembl
ID A0A067JL78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23431 PE=4 SV=1
Gene Ontology
ID GO:0003743
description translation initiation factor eif-2b subunit epsilon-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40280: 171202-180694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_200 0.0 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
2 Hb_000138_100 0.0547513006 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
3 Hb_000347_430 0.0549601652 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
4 Hb_001862_130 0.0608096273 - - Protein FRIGIDA, putative [Ricinus communis]
5 Hb_004109_080 0.0610757417 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
6 Hb_188281_040 0.0623046208 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
7 Hb_000340_530 0.0637373078 - - hypothetical protein VITISV_016664 [Vitis vinifera]
8 Hb_003517_040 0.063746911 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
9 Hb_004846_220 0.0642298437 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
10 Hb_001417_030 0.0646268112 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_001999_310 0.0649467596 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
12 Hb_003411_040 0.0650942614 - - unnamed protein product [Coffea canephora]
13 Hb_027073_020 0.0660791277 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
14 Hb_002989_020 0.0662725368 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
15 Hb_001876_050 0.0675013602 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
16 Hb_002263_020 0.0683187996 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
17 Hb_183510_020 0.0688017122 - - coated vesicle membrane protein, putative [Ricinus communis]
18 Hb_004567_090 0.0698681497 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
19 Hb_001814_030 0.0698772482 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
20 Hb_122968_010 0.069936525 - - hypothetical protein JCGZ_23576 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_200 Hb_000406_200 Hb_000138_100 Hb_000138_100 Hb_000406_200--Hb_000138_100 Hb_000347_430 Hb_000347_430 Hb_000406_200--Hb_000347_430 Hb_001862_130 Hb_001862_130 Hb_000406_200--Hb_001862_130 Hb_004109_080 Hb_004109_080 Hb_000406_200--Hb_004109_080 Hb_188281_040 Hb_188281_040 Hb_000406_200--Hb_188281_040 Hb_000340_530 Hb_000340_530 Hb_000406_200--Hb_000340_530 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_000363_310 Hb_000363_310 Hb_000347_430--Hb_000363_310 Hb_000347_430--Hb_000138_100 Hb_000258_070 Hb_000258_070 Hb_000347_430--Hb_000258_070 Hb_000347_430--Hb_003517_040 Hb_001021_150 Hb_001021_150 Hb_000347_430--Hb_001021_150 Hb_000656_070 Hb_000656_070 Hb_001862_130--Hb_000656_070 Hb_001862_130--Hb_188281_040 Hb_003734_010 Hb_003734_010 Hb_001862_130--Hb_003734_010 Hb_122968_010 Hb_122968_010 Hb_001862_130--Hb_122968_010 Hb_002205_030 Hb_002205_030 Hb_001862_130--Hb_002205_030 Hb_004567_090 Hb_004567_090 Hb_004109_080--Hb_004567_090 Hb_012498_010 Hb_012498_010 Hb_004109_080--Hb_012498_010 Hb_005291_050 Hb_005291_050 Hb_004109_080--Hb_005291_050 Hb_004109_080--Hb_000340_530 Hb_004109_080--Hb_002263_020 Hb_001789_110 Hb_001789_110 Hb_188281_040--Hb_001789_110 Hb_003117_030 Hb_003117_030 Hb_188281_040--Hb_003117_030 Hb_005489_040 Hb_005489_040 Hb_188281_040--Hb_005489_040 Hb_000409_050 Hb_000409_050 Hb_188281_040--Hb_000409_050 Hb_188281_040--Hb_000363_310 Hb_002989_020 Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_093458_040 Hb_093458_040 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.35886 12.1221 11.8942 13.6399 13.6195 12.8077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.91284 12.9971 11.2768 18.5382 18.5794

CAGE analysis