Hb_000406_230

Information

Type -
Description -
Location Contig406: 202855-206997
Sequence    

Annotation

kegg
ID rcu:RCOM_1429120
description nucleolar protein nop56, putative
nr
ID XP_012089180.1
description PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
swissprot
ID O04658
description Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2
trembl
ID A0A067JL84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23436 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40290: 202990-206991
cDNA
(Sanger)
(ID:Location)		 018_G12.ab1: 203224-203315

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_230 0.0 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
2 Hb_023344_010 0.0492806473 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
3 Hb_007558_070 0.0523972597 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
4 Hb_000010_360 0.0543476815 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
5 Hb_000960_050 0.060728959 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
6 Hb_000191_130 0.0607478067 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
7 Hb_000917_160 0.0664076976 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
8 Hb_000648_080 0.0678618971 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
9 Hb_000640_310 0.0686687007 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
10 Hb_000896_080 0.07073113 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
11 Hb_000398_020 0.0739804988 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
12 Hb_001307_080 0.0747885186 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
13 Hb_000264_030 0.0774243928 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
14 Hb_000230_090 0.0790738308 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
15 Hb_005260_010 0.0793576273 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
16 Hb_154114_010 0.0801652237 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
17 Hb_002374_320 0.0812058575 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
18 Hb_004429_160 0.0816166651 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
19 Hb_000398_080 0.0827776427 - - tip120, putative [Ricinus communis]
20 Hb_118840_050 0.0829137349 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000406_230 Hb_000406_230 Hb_023344_010 Hb_023344_010 Hb_000406_230--Hb_023344_010 Hb_007558_070 Hb_007558_070 Hb_000406_230--Hb_007558_070 Hb_000010_360 Hb_000010_360 Hb_000406_230--Hb_000010_360 Hb_000960_050 Hb_000960_050 Hb_000406_230--Hb_000960_050 Hb_000191_130 Hb_000191_130 Hb_000406_230--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000406_230--Hb_000917_160 Hb_000640_310 Hb_000640_310 Hb_023344_010--Hb_000640_310 Hb_023344_010--Hb_007558_070 Hb_023344_010--Hb_000010_360 Hb_023344_010--Hb_000191_130 Hb_001799_050 Hb_001799_050 Hb_023344_010--Hb_001799_050 Hb_007558_070--Hb_000191_130 Hb_000398_020 Hb_000398_020 Hb_007558_070--Hb_000398_020 Hb_007558_070--Hb_000917_160 Hb_007558_070--Hb_000010_360 Hb_000010_360--Hb_000191_130 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020 Hb_000230_090 Hb_000230_090 Hb_000960_050--Hb_000230_090 Hb_008112_030 Hb_008112_030 Hb_000960_050--Hb_008112_030 Hb_009112_010 Hb_009112_010 Hb_000960_050--Hb_009112_010 Hb_000914_120 Hb_000914_120 Hb_000960_050--Hb_000914_120 Hb_000174_060 Hb_000174_060 Hb_000960_050--Hb_000174_060 Hb_000062_470 Hb_000062_470 Hb_000191_130--Hb_000062_470 Hb_000191_130--Hb_000917_160 Hb_004429_160 Hb_004429_160 Hb_000191_130--Hb_004429_160 Hb_000191_130--Hb_000640_310 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_000917_160--Hb_000062_470 Hb_118840_050 Hb_118840_050 Hb_000917_160--Hb_118840_050 Hb_010417_060 Hb_010417_060 Hb_000917_160--Hb_010417_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0273 63.848 43.135 30.5745 67.5903 61.0557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.0666 26.0254 16.3796 51.5397 32.9884

CAGE analysis