Hb_000406_240

Information

Type -
Description -
Location Contig406: 208831-214125
Sequence    

Annotation

kegg
ID rcu:RCOM_1429110
description hypothetical protein
nr
ID XP_012089182.1
description PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
swissprot
ID Q0DKP4
description Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1
trembl
ID A0A067JVP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23437 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40293: 210057-214014 , PASA_asmbl_40296: 213156-213370 , PASA_asmbl_40297: 213523-213899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_240 0.0 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
2 Hb_007982_070 0.062191511 - - PREDICTED: protein CPR-5 [Jatropha curcas]
3 Hb_017075_030 0.0689832488 - - helicase, putative [Ricinus communis]
4 Hb_001486_080 0.069011351 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
5 Hb_005883_010 0.0736795853 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000140_330 0.0738574557 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
7 Hb_004635_050 0.0747000441 - - nucleolar phosphoprotein, putative [Ricinus communis]
8 Hb_000300_360 0.0788500399 - - PREDICTED: exosome component 10 [Jatropha curcas]
9 Hb_031042_070 0.0792617979 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010738_010 0.0792672474 - - PREDICTED: B2 protein [Jatropha curcas]
11 Hb_000283_130 0.0795433618 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
12 Hb_032202_110 0.0795478573 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
13 Hb_003020_110 0.0803516054 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
14 Hb_011386_040 0.0807235085 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
15 Hb_000224_060 0.081079087 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
16 Hb_000140_080 0.082497838 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
17 Hb_008554_120 0.0827957725 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_007943_120 0.0852019192 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
19 Hb_033095_020 0.0854687155 - - conserved hypothetical protein [Ricinus communis]
20 Hb_031527_020 0.0861516355 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_240 Hb_000406_240 Hb_007982_070 Hb_007982_070 Hb_000406_240--Hb_007982_070 Hb_017075_030 Hb_017075_030 Hb_000406_240--Hb_017075_030 Hb_001486_080 Hb_001486_080 Hb_000406_240--Hb_001486_080 Hb_005883_010 Hb_005883_010 Hb_000406_240--Hb_005883_010 Hb_000140_330 Hb_000140_330 Hb_000406_240--Hb_000140_330 Hb_004635_050 Hb_004635_050 Hb_000406_240--Hb_004635_050 Hb_000300_360 Hb_000300_360 Hb_007982_070--Hb_000300_360 Hb_031042_070 Hb_031042_070 Hb_007982_070--Hb_031042_070 Hb_000270_460 Hb_000270_460 Hb_007982_070--Hb_000270_460 Hb_007558_120 Hb_007558_120 Hb_007982_070--Hb_007558_120 Hb_032202_110 Hb_032202_110 Hb_007982_070--Hb_032202_110 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_003106_150 Hb_003106_150 Hb_017075_030--Hb_003106_150 Hb_017075_030--Hb_031042_070 Hb_001946_300 Hb_001946_300 Hb_017075_030--Hb_001946_300 Hb_003878_140 Hb_003878_140 Hb_017075_030--Hb_003878_140 Hb_002301_220 Hb_002301_220 Hb_001486_080--Hb_002301_220 Hb_001486_080--Hb_007982_070 Hb_008554_120 Hb_008554_120 Hb_001486_080--Hb_008554_120 Hb_001486_080--Hb_005883_010 Hb_134951_010 Hb_134951_010 Hb_001486_080--Hb_134951_010 Hb_007943_120 Hb_007943_120 Hb_005883_010--Hb_007943_120 Hb_005188_060 Hb_005188_060 Hb_005883_010--Hb_005188_060 Hb_000283_130 Hb_000283_130 Hb_005883_010--Hb_000283_130 Hb_010738_010 Hb_010738_010 Hb_005883_010--Hb_010738_010 Hb_005883_010--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005883_010--Hb_007229_040 Hb_000140_330--Hb_005188_060 Hb_000140_330--Hb_007943_120 Hb_006452_160 Hb_006452_160 Hb_000140_330--Hb_006452_160 Hb_000368_020 Hb_000368_020 Hb_000140_330--Hb_000368_020 Hb_004635_050--Hb_007943_120 Hb_004635_050--Hb_007558_120 Hb_004635_050--Hb_033883_060 Hb_003777_160 Hb_003777_160 Hb_004635_050--Hb_003777_160 Hb_004635_050--Hb_005883_010 Hb_019153_020 Hb_019153_020 Hb_004635_050--Hb_019153_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1126 18.2106 10.1381 6.4112 18.8564 16.531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0319 9.18117 7.19623 7.8658 5.1942

CAGE analysis