Hb_000407_070

Information

Type -
Description -
Location Contig407: 153858-159011
Sequence    

Annotation

kegg
ID rcu:RCOM_0100300
description Tyrosine-protein phosphatase SIW14, putative
nr
ID XP_012080649.1
description PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVN4
description Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1
trembl
ID A0A067KG52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13757 PE=4 SV=1
Gene Ontology
ID GO:0004725
description tyrosine-protein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40324: 153870-159043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000407_070 0.0 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
2 Hb_111985_110 0.110712829 - - thioredoxin H-type 3 [Hevea brasiliensis]
3 Hb_012305_130 0.1125653436 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
4 Hb_021409_080 0.1185338954 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
5 Hb_002301_160 0.12152005 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
6 Hb_004627_030 0.1219677293 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
7 Hb_000009_290 0.1244105645 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
8 Hb_000110_120 0.1362871102 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
9 Hb_000162_220 0.1369711456 - - nodulin family protein [Populus trichocarpa]
10 Hb_002045_070 0.137712701 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
11 Hb_002995_050 0.1433014013 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
12 Hb_000327_380 0.1443586536 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
13 Hb_000417_100 0.14438172 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
14 Hb_001269_190 0.1445259104 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
15 Hb_000365_270 0.1447220895 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
16 Hb_000384_070 0.1453054647 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000749_050 0.1455728674 - - mitochondrial thioredoxin [Hevea brasiliensis]
18 Hb_004800_100 0.1478634173 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000975_350 0.1481162703 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
20 Hb_171900_060 0.1506772018 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]

Gene co-expression network

sample Hb_000407_070 Hb_000407_070 Hb_111985_110 Hb_111985_110 Hb_000407_070--Hb_111985_110 Hb_012305_130 Hb_012305_130 Hb_000407_070--Hb_012305_130 Hb_021409_080 Hb_021409_080 Hb_000407_070--Hb_021409_080 Hb_002301_160 Hb_002301_160 Hb_000407_070--Hb_002301_160 Hb_004627_030 Hb_004627_030 Hb_000407_070--Hb_004627_030 Hb_000009_290 Hb_000009_290 Hb_000407_070--Hb_000009_290 Hb_111985_110--Hb_021409_080 Hb_000417_100 Hb_000417_100 Hb_111985_110--Hb_000417_100 Hb_111985_110--Hb_004627_030 Hb_111985_110--Hb_012305_130 Hb_006573_290 Hb_006573_290 Hb_111985_110--Hb_006573_290 Hb_012305_130--Hb_021409_080 Hb_000110_120 Hb_000110_120 Hb_012305_130--Hb_000110_120 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_028049_010 Hb_028049_010 Hb_012305_130--Hb_028049_010 Hb_002110_100 Hb_002110_100 Hb_012305_130--Hb_002110_100 Hb_012305_130--Hb_004627_030 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_021409_080--Hb_002110_100 Hb_021409_080--Hb_000110_120 Hb_002045_070 Hb_002045_070 Hb_002301_160--Hb_002045_070 Hb_002301_160--Hb_000110_120 Hb_002301_160--Hb_000009_290 Hb_002301_160--Hb_004627_030 Hb_002042_150 Hb_002042_150 Hb_002301_160--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_002301_160--Hb_001489_110 Hb_004800_100 Hb_004800_100 Hb_004627_030--Hb_004800_100 Hb_004627_030--Hb_002045_070 Hb_000300_430 Hb_000300_430 Hb_004627_030--Hb_000300_430 Hb_000849_130 Hb_000849_130 Hb_000009_290--Hb_000849_130 Hb_000327_380 Hb_000327_380 Hb_000009_290--Hb_000327_380 Hb_002303_060 Hb_002303_060 Hb_000009_290--Hb_002303_060 Hb_000009_290--Hb_002045_070 Hb_001410_060 Hb_001410_060 Hb_000009_290--Hb_001410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63271 6.23737 5.58272 20.1096 1.46826 1.88557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6442 12.6393 6.64861 6.01273 5.29238

CAGE analysis