Hb_000407_080

Information

Type -
Description -
Location Contig407: 174916-176386
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15710g
description POPTRDRAFT_573016; 1-aminocyclopropane-1-carboxylate oxidase family protein
nr
ID AAP41850.1
description 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
swissprot
ID Q9MB94
description 1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1
trembl
ID Q5VLJ5
description 1-aminocyclopropane-1-carboxylate oxidase OS=Hevea brasiliensis GN=aco2 PE=2 SV=1
Gene Ontology
ID GO:0016706
description 1-aminocyclopropane-1-carboxylate oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40325: 175014-176344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000407_080 0.0 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
2 Hb_013914_020 0.0565502778 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
3 Hb_009581_050 0.0733731203 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
4 Hb_000586_100 0.081466902 - - conserved hypothetical protein [Ricinus communis]
5 Hb_134017_010 0.0882577796 - - kinase, putative [Ricinus communis]
6 Hb_003439_090 0.0884796243 - - kinase, putative [Ricinus communis]
7 Hb_003807_020 0.0930606137 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
8 Hb_000335_050 0.0952424823 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
9 Hb_003052_120 0.1028331492 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
10 Hb_003376_200 0.1031289746 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_003430_020 0.1040410911 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
12 Hb_002007_140 0.107054138 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
13 Hb_006020_010 0.1073909329 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
14 Hb_012807_060 0.1117257504 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_003788_010 0.1118731111 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
16 Hb_000045_180 0.1122851728 - - aquaporin PIP1 [Hevea brasiliensis]
17 Hb_130967_010 0.1153337709 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_017866_020 0.1161747577 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
19 Hb_008406_020 0.1236562236 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
20 Hb_000579_180 0.1250783914 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000407_080 Hb_000407_080 Hb_013914_020 Hb_013914_020 Hb_000407_080--Hb_013914_020 Hb_009581_050 Hb_009581_050 Hb_000407_080--Hb_009581_050 Hb_000586_100 Hb_000586_100 Hb_000407_080--Hb_000586_100 Hb_134017_010 Hb_134017_010 Hb_000407_080--Hb_134017_010 Hb_003439_090 Hb_003439_090 Hb_000407_080--Hb_003439_090 Hb_003807_020 Hb_003807_020 Hb_000407_080--Hb_003807_020 Hb_013914_020--Hb_000586_100 Hb_013914_020--Hb_003439_090 Hb_000045_180 Hb_000045_180 Hb_013914_020--Hb_000045_180 Hb_017866_020 Hb_017866_020 Hb_013914_020--Hb_017866_020 Hb_003052_120 Hb_003052_120 Hb_013914_020--Hb_003052_120 Hb_012807_060 Hb_012807_060 Hb_009581_050--Hb_012807_060 Hb_002007_140 Hb_002007_140 Hb_009581_050--Hb_002007_140 Hb_009581_050--Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_009581_050--Hb_000335_050 Hb_003430_020 Hb_003430_020 Hb_009581_050--Hb_003430_020 Hb_000586_100--Hb_003439_090 Hb_006020_010 Hb_006020_010 Hb_000586_100--Hb_006020_010 Hb_006364_020 Hb_006364_020 Hb_000586_100--Hb_006364_020 Hb_000586_100--Hb_003052_120 Hb_003439_020 Hb_003439_020 Hb_134017_010--Hb_003439_020 Hb_003376_200 Hb_003376_200 Hb_134017_010--Hb_003376_200 Hb_134017_010--Hb_003439_090 Hb_074312_020 Hb_074312_020 Hb_134017_010--Hb_074312_020 Hb_130967_010 Hb_130967_010 Hb_134017_010--Hb_130967_010 Hb_134017_010--Hb_003430_020 Hb_003439_090--Hb_000045_180 Hb_003439_090--Hb_003430_020 Hb_003807_020--Hb_000335_050 Hb_000579_180 Hb_000579_180 Hb_003807_020--Hb_000579_180 Hb_004447_020 Hb_004447_020 Hb_003807_020--Hb_004447_020 Hb_003807_020--Hb_002007_140 Hb_002391_350 Hb_002391_350 Hb_003807_020--Hb_002391_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.479988 136.567 27.096 88.1433 0.280224 0.296765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470428 0.215865 0.229799 163.595 11.9533

CAGE analysis