Hb_000408_050

Information

Type -
Description -
Location Contig408: 70840-71172
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11350g
description hypothetical protein
nr
ID XP_006372116.1
description hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PAN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11350g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40376: 70794-71349
cDNA
(Sanger)
(ID:Location)		 021_B14.ab1: 70794-71343

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000408_050 0.0 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
2 Hb_001486_260 0.1202886857 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
3 Hb_005463_060 0.1623997848 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
4 Hb_001158_150 0.1685722306 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
5 Hb_000484_020 0.1715555883 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
6 Hb_004102_190 0.1738198003 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]
7 Hb_003226_220 0.1744326092 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
8 Hb_092272_020 0.1766880279 - - hypothetical protein EUGRSUZ_F00278 [Eucalyptus grandis]
9 Hb_003405_060 0.1768514161 - - -
10 Hb_000995_040 0.1793521656 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002716_090 0.1796780147 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
12 Hb_000389_060 0.1822237326 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
13 Hb_116420_030 0.1824544093 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
14 Hb_002875_080 0.1834500429 - - protein with unknown function [Ricinus communis]
15 Hb_000243_040 0.1843499792 - - -
16 Hb_000295_120 0.1847064987 - - -
17 Hb_001085_010 0.1853451416 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
18 Hb_000363_320 0.1853699435 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
19 Hb_010810_020 0.1870757509 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
20 Hb_002571_020 0.1877532501 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]

Gene co-expression network

sample Hb_000408_050 Hb_000408_050 Hb_001486_260 Hb_001486_260 Hb_000408_050--Hb_001486_260 Hb_005463_060 Hb_005463_060 Hb_000408_050--Hb_005463_060 Hb_001158_150 Hb_001158_150 Hb_000408_050--Hb_001158_150 Hb_000484_020 Hb_000484_020 Hb_000408_050--Hb_000484_020 Hb_004102_190 Hb_004102_190 Hb_000408_050--Hb_004102_190 Hb_003226_220 Hb_003226_220 Hb_000408_050--Hb_003226_220 Hb_001486_260--Hb_004102_190 Hb_000389_060 Hb_000389_060 Hb_001486_260--Hb_000389_060 Hb_000085_200 Hb_000085_200 Hb_001486_260--Hb_000085_200 Hb_092272_020 Hb_092272_020 Hb_001486_260--Hb_092272_020 Hb_002875_080 Hb_002875_080 Hb_001486_260--Hb_002875_080 Hb_003988_040 Hb_003988_040 Hb_005463_060--Hb_003988_040 Hb_003607_170 Hb_003607_170 Hb_005463_060--Hb_003607_170 Hb_002897_080 Hb_002897_080 Hb_005463_060--Hb_002897_080 Hb_005463_060--Hb_003226_220 Hb_003638_080 Hb_003638_080 Hb_005463_060--Hb_003638_080 Hb_000046_260 Hb_000046_260 Hb_005463_060--Hb_000046_260 Hb_003018_050 Hb_003018_050 Hb_001158_150--Hb_003018_050 Hb_005278_020 Hb_005278_020 Hb_001158_150--Hb_005278_020 Hb_001842_040 Hb_001842_040 Hb_001158_150--Hb_001842_040 Hb_002631_020 Hb_002631_020 Hb_001158_150--Hb_002631_020 Hb_000364_020 Hb_000364_020 Hb_001158_150--Hb_000364_020 Hb_006452_040 Hb_006452_040 Hb_001158_150--Hb_006452_040 Hb_002571_020 Hb_002571_020 Hb_000484_020--Hb_002571_020 Hb_012022_120 Hb_012022_120 Hb_000484_020--Hb_012022_120 Hb_000995_040 Hb_000995_040 Hb_000484_020--Hb_000995_040 Hb_000312_090 Hb_000312_090 Hb_000484_020--Hb_000312_090 Hb_000505_140 Hb_000505_140 Hb_000484_020--Hb_000505_140 Hb_003126_090 Hb_003126_090 Hb_000484_020--Hb_003126_090 Hb_004102_190--Hb_000389_060 Hb_001019_090 Hb_001019_090 Hb_004102_190--Hb_001019_090 Hb_001279_070 Hb_001279_070 Hb_004102_190--Hb_001279_070 Hb_000316_110 Hb_000316_110 Hb_004102_190--Hb_000316_110 Hb_000189_530 Hb_000189_530 Hb_004102_190--Hb_000189_530 Hb_000212_470 Hb_000212_470 Hb_003226_220--Hb_000212_470 Hb_001571_090 Hb_001571_090 Hb_003226_220--Hb_001571_090 Hb_000272_050 Hb_000272_050 Hb_003226_220--Hb_000272_050 Hb_003226_220--Hb_003988_040 Hb_001575_030 Hb_001575_030 Hb_003226_220--Hb_001575_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7441 0.554385 2.60311 29.7087 15.052 22.1739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.6392 55.0607 12.6915 3.41803 0.748699

CAGE analysis