Hb_000409_020

Information

Type -
Description -
Location Contig409: 69170-78559
Sequence    

Annotation

kegg
ID rcu:RCOM_0535560
description vacuolar ATP synthase subunit ac39, putative (EC:3.6.3.14)
nr
ID XP_012083020.1
description PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
swissprot
ID Q9LHA4
description V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-d2 PE=2 SV=1
trembl
ID A0A067LAI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09730 PE=4 SV=1
Gene Ontology
ID GO:0033179
description v-type proton atpase subunit d2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40391: 69239-78544 , PASA_asmbl_40392: 74705-74955 , PASA_asmbl_40395: 73915-74175
cDNA
(Sanger)
(ID:Location)		 045_J11.ab1: 69239-76286

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000409_020 0.0 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
2 Hb_003206_070 0.0555170415 - - organic anion transporter, putative [Ricinus communis]
3 Hb_000898_040 0.0627356252 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_004109_090 0.0642041917 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_005663_060 0.0651005089 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
6 Hb_002687_110 0.0723677784 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
7 Hb_002016_110 0.0755007685 - - transducin family protein [Populus trichocarpa]
8 Hb_000907_080 0.0755509805 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
9 Hb_006915_050 0.0755676846 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
10 Hb_001818_090 0.076221593 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000207_250 0.0770911283 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
12 Hb_007441_120 0.0775108757 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
13 Hb_001248_130 0.0781595594 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
14 Hb_002105_040 0.0786953631 - - -
15 Hb_004254_120 0.0787412608 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000510_320 0.0787536116 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
17 Hb_008695_210 0.0816367673 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
18 Hb_001277_330 0.0818268583 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
19 Hb_001009_270 0.0824536739 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
20 Hb_011316_040 0.082943693 - - peptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000409_020 Hb_000409_020 Hb_003206_070 Hb_003206_070 Hb_000409_020--Hb_003206_070 Hb_000898_040 Hb_000898_040 Hb_000409_020--Hb_000898_040 Hb_004109_090 Hb_004109_090 Hb_000409_020--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_000409_020--Hb_005663_060 Hb_002687_110 Hb_002687_110 Hb_000409_020--Hb_002687_110 Hb_002016_110 Hb_002016_110 Hb_000409_020--Hb_002016_110 Hb_001818_090 Hb_001818_090 Hb_003206_070--Hb_001818_090 Hb_000676_250 Hb_000676_250 Hb_003206_070--Hb_000676_250 Hb_003206_070--Hb_005663_060 Hb_003177_030 Hb_003177_030 Hb_003206_070--Hb_003177_030 Hb_007441_120 Hb_007441_120 Hb_003206_070--Hb_007441_120 Hb_002217_300 Hb_002217_300 Hb_000898_040--Hb_002217_300 Hb_000207_250 Hb_000207_250 Hb_000898_040--Hb_000207_250 Hb_000907_080 Hb_000907_080 Hb_000898_040--Hb_000907_080 Hb_000898_040--Hb_004109_090 Hb_000080_190 Hb_000080_190 Hb_000898_040--Hb_000080_190 Hb_003175_010 Hb_003175_010 Hb_004109_090--Hb_003175_010 Hb_003929_160 Hb_003929_160 Hb_004109_090--Hb_003929_160 Hb_004724_200 Hb_004724_200 Hb_004109_090--Hb_004724_200 Hb_004109_090--Hb_001818_090 Hb_004109_090--Hb_005663_060 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_006922_100 Hb_006922_100 Hb_005663_060--Hb_006922_100 Hb_005663_060--Hb_007441_120 Hb_005663_060--Hb_002016_110 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_004738_040 Hb_004738_040 Hb_002687_110--Hb_004738_040 Hb_002687_110--Hb_000080_190 Hb_001277_330 Hb_001277_330 Hb_002687_110--Hb_001277_330 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_002016_110--Hb_007441_120 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.1978 26.4917 29.227 46.2346 58.9923 74.1148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.8759 57.6934 105.788 37.0877 36.6961

CAGE analysis