Hb_000411_020

Information

Type -
Description -
Location Contig411: 12762-15115
Sequence    

Annotation

kegg
ID rcu:RCOM_1593110
description cytochrome P450, putative (EC:1.14.13.88)
nr
ID XP_002510313.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID O49394
description Cytochrome P450 82C2 OS=Arabidopsis thaliana GN=CYP82C2 PE=2 SV=2
trembl
ID B9R7M0
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1593110 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40689: 12707-14998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000411_020 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_000631_100 0.0743057493 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
3 Hb_189208_050 0.0769353948 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
4 Hb_002641_140 0.0773543315 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_000098_260 0.0878023202 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_003216_140 0.0883078451 - - F-box protein SNE, putative [Ricinus communis]
7 Hb_005357_120 0.0985706282 transcription factor TF Family: MYB-related -
8 Hb_002888_100 0.1054834179 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
9 Hb_001247_090 0.110025856 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
10 Hb_000010_440 0.1106043782 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
11 Hb_027556_060 0.1165785644 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
12 Hb_001638_150 0.1165881107 - - acyltransferase, putative [Ricinus communis]
13 Hb_005679_120 0.117285033 - - hypothetical protein RCOM_0284080 [Ricinus communis]
14 Hb_000365_430 0.1176475814 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
15 Hb_092975_010 0.1187086303 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
16 Hb_008021_040 0.1192080482 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
17 Hb_012787_060 0.1204288652 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
18 Hb_001562_030 0.1237254879 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
19 Hb_024868_010 0.1263694531 - - protein kinase, putative [Ricinus communis]
20 Hb_087427_010 0.1272074176 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]

Gene co-expression network

sample Hb_000411_020 Hb_000411_020 Hb_000631_100 Hb_000631_100 Hb_000411_020--Hb_000631_100 Hb_189208_050 Hb_189208_050 Hb_000411_020--Hb_189208_050 Hb_002641_140 Hb_002641_140 Hb_000411_020--Hb_002641_140 Hb_000098_260 Hb_000098_260 Hb_000411_020--Hb_000098_260 Hb_003216_140 Hb_003216_140 Hb_000411_020--Hb_003216_140 Hb_005357_120 Hb_005357_120 Hb_000411_020--Hb_005357_120 Hb_000631_100--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_000631_100--Hb_024868_010 Hb_087427_010 Hb_087427_010 Hb_000631_100--Hb_087427_010 Hb_000631_100--Hb_002641_140 Hb_008021_040 Hb_008021_040 Hb_000631_100--Hb_008021_040 Hb_189208_050--Hb_003216_140 Hb_189208_050--Hb_002641_140 Hb_001247_090 Hb_001247_090 Hb_189208_050--Hb_001247_090 Hb_189208_050--Hb_024868_010 Hb_002641_140--Hb_008021_040 Hb_002641_140--Hb_000098_260 Hb_002641_140--Hb_005357_120 Hb_012787_060 Hb_012787_060 Hb_002641_140--Hb_012787_060 Hb_092975_010 Hb_092975_010 Hb_000098_260--Hb_092975_010 Hb_000365_430 Hb_000365_430 Hb_000098_260--Hb_000365_430 Hb_000742_130 Hb_000742_130 Hb_000098_260--Hb_000742_130 Hb_000645_160 Hb_000645_160 Hb_000098_260--Hb_000645_160 Hb_003216_140--Hb_001247_090 Hb_003216_140--Hb_024868_010 Hb_003216_140--Hb_000631_100 Hb_027556_060 Hb_027556_060 Hb_003216_140--Hb_027556_060 Hb_005357_120--Hb_000631_100 Hb_004079_100 Hb_004079_100 Hb_005357_120--Hb_004079_100 Hb_001638_150 Hb_001638_150 Hb_005357_120--Hb_001638_150 Hb_005357_120--Hb_008021_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.73565 3.39067 4.89094 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.23587 0.972663

CAGE analysis