Hb_000412_010

Information

Type -
Description -
Location Contig412: 10251-28769
Sequence    

Annotation

kegg
ID rcu:RCOM_0490830
description hect ubiquitin-protein ligase, putative
nr
ID XP_002530820.1
description hect ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q6WWW4
description E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1
trembl
ID B9SXV1
description Hect ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0490830 PE=4 SV=1
Gene Ontology
ID GO:0005886
description e3 ubiquitin-protein ligase upl3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40796: 10851-28530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000412_010 0.0 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_003060_060 0.0513439272 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
3 Hb_000395_070 0.0542768079 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
4 Hb_159558_010 0.0603024119 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
5 Hb_001550_060 0.0603400696 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
6 Hb_001628_070 0.0631805983 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000230_260 0.0656400272 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
8 Hb_005656_040 0.0660561403 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_004182_050 0.0661825929 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
10 Hb_000215_140 0.0674242214 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
11 Hb_071130_010 0.0680439211 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
12 Hb_002170_050 0.0687837923 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
13 Hb_023226_080 0.0711812763 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
14 Hb_000313_120 0.0717482062 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
15 Hb_002639_080 0.0725496165 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
16 Hb_000473_110 0.0725624374 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
17 Hb_002784_110 0.0740333895 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
18 Hb_006420_040 0.0740608377 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
19 Hb_011202_020 0.0746476369 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
20 Hb_001188_020 0.0746481863 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000412_010 Hb_000412_010 Hb_003060_060 Hb_003060_060 Hb_000412_010--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_000412_010--Hb_000395_070 Hb_159558_010 Hb_159558_010 Hb_000412_010--Hb_159558_010 Hb_001550_060 Hb_001550_060 Hb_000412_010--Hb_001550_060 Hb_001628_070 Hb_001628_070 Hb_000412_010--Hb_001628_070 Hb_000230_260 Hb_000230_260 Hb_000412_010--Hb_000230_260 Hb_003060_060--Hb_000395_070 Hb_003060_060--Hb_000230_260 Hb_001529_040 Hb_001529_040 Hb_003060_060--Hb_001529_040 Hb_085781_020 Hb_085781_020 Hb_003060_060--Hb_085781_020 Hb_041327_010 Hb_041327_010 Hb_003060_060--Hb_041327_010 Hb_012395_140 Hb_012395_140 Hb_000395_070--Hb_012395_140 Hb_000740_100 Hb_000740_100 Hb_000395_070--Hb_000740_100 Hb_002815_030 Hb_002815_030 Hb_000395_070--Hb_002815_030 Hb_000579_230 Hb_000579_230 Hb_000395_070--Hb_000579_230 Hb_000614_210 Hb_000614_210 Hb_159558_010--Hb_000614_210 Hb_005542_140 Hb_005542_140 Hb_159558_010--Hb_005542_140 Hb_001814_030 Hb_001814_030 Hb_159558_010--Hb_001814_030 Hb_000174_060 Hb_000174_060 Hb_159558_010--Hb_000174_060 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_009615_170 Hb_009615_170 Hb_159558_010--Hb_009615_170 Hb_006420_040 Hb_006420_040 Hb_001550_060--Hb_006420_040 Hb_001550_060--Hb_012395_140 Hb_001550_060--Hb_003206_130 Hb_000025_320 Hb_000025_320 Hb_001550_060--Hb_000025_320 Hb_001195_320 Hb_001195_320 Hb_001550_060--Hb_001195_320 Hb_001550_060--Hb_000395_070 Hb_004705_020 Hb_004705_020 Hb_001628_070--Hb_004705_020 Hb_006531_020 Hb_006531_020 Hb_001628_070--Hb_006531_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000024_040 Hb_000024_040 Hb_001628_070--Hb_000024_040 Hb_071130_010 Hb_071130_010 Hb_000230_260--Hb_071130_010 Hb_000069_120 Hb_000069_120 Hb_000230_260--Hb_000069_120 Hb_000230_260--Hb_041327_010 Hb_000230_260--Hb_085781_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5038 21.0763 8.21593 12.2729 18.4418 15.537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.18209 8.5597 13.8671 20.2111 16.8428

CAGE analysis