Hb_000412_050

Information

Type -
Description -
Location Contig412: 142141-143428
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04140g
description hypothetical protein
nr
ID XP_002324016.2
description hypothetical protein POPTR_0017s04140g [Populus trichocarpa]
swissprot
ID Q9FID5
description Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1
trembl
ID F6H7C6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00420 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at5g39020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40798: 143021-161235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000412_050 0.0 - - hypothetical protein POPTR_0017s04140g [Populus trichocarpa]
2 Hb_000254_040 0.1595417038 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
3 Hb_006949_030 0.1636422839 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_002686_390 0.16388848 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
5 Hb_004079_110 0.1683539819 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
6 Hb_000412_060 0.1715364735 - - hypothetical protein JCGZ_18814 [Jatropha curcas]
7 Hb_001621_020 0.1723579945 - - -
8 Hb_001331_040 0.1792042481 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
9 Hb_001252_040 0.1793259488 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
10 Hb_003878_100 0.1808257207 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
11 Hb_031042_030 0.1809804089 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
12 Hb_001102_270 0.1843575028 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
13 Hb_002030_170 0.1843651824 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
14 Hb_162286_030 0.1848664365 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
15 Hb_000521_360 0.1850414721 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
16 Hb_000085_230 0.1853246027 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
17 Hb_000010_200 0.1860841967 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_001514_210 0.1865249818 - - hypothetical protein VITISV_012133 [Vitis vinifera]
19 Hb_006711_020 0.1895684067 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
20 Hb_010926_010 0.1902485499 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]

Gene co-expression network

sample Hb_000412_050 Hb_000412_050 Hb_000254_040 Hb_000254_040 Hb_000412_050--Hb_000254_040 Hb_006949_030 Hb_006949_030 Hb_000412_050--Hb_006949_030 Hb_002686_390 Hb_002686_390 Hb_000412_050--Hb_002686_390 Hb_004079_110 Hb_004079_110 Hb_000412_050--Hb_004079_110 Hb_000412_060 Hb_000412_060 Hb_000412_050--Hb_000412_060 Hb_001621_020 Hb_001621_020 Hb_000412_050--Hb_001621_020 Hb_000254_040--Hb_002686_390 Hb_000254_040--Hb_006949_030 Hb_001331_040 Hb_001331_040 Hb_000254_040--Hb_001331_040 Hb_000010_200 Hb_000010_200 Hb_000254_040--Hb_000010_200 Hb_001013_040 Hb_001013_040 Hb_000254_040--Hb_001013_040 Hb_000381_030 Hb_000381_030 Hb_000254_040--Hb_000381_030 Hb_006949_030--Hb_001331_040 Hb_006949_030--Hb_000381_030 Hb_006938_010 Hb_006938_010 Hb_006949_030--Hb_006938_010 Hb_006949_030--Hb_001621_020 Hb_006949_030--Hb_000010_200 Hb_006949_030--Hb_002686_390 Hb_002686_390--Hb_000010_200 Hb_006711_020 Hb_006711_020 Hb_002686_390--Hb_006711_020 Hb_004884_200 Hb_004884_200 Hb_002686_390--Hb_004884_200 Hb_001514_210 Hb_001514_210 Hb_002686_390--Hb_001514_210 Hb_009778_050 Hb_009778_050 Hb_004079_110--Hb_009778_050 Hb_004079_110--Hb_006949_030 Hb_001660_040 Hb_001660_040 Hb_004079_110--Hb_001660_040 Hb_001723_070 Hb_001723_070 Hb_004079_110--Hb_001723_070 Hb_004079_110--Hb_001621_020 Hb_001609_080 Hb_001609_080 Hb_004079_110--Hb_001609_080 Hb_006788_150 Hb_006788_150 Hb_000412_060--Hb_006788_150 Hb_018591_050 Hb_018591_050 Hb_000412_060--Hb_018591_050 Hb_025526_010 Hb_025526_010 Hb_000412_060--Hb_025526_010 Hb_007894_260 Hb_007894_260 Hb_000412_060--Hb_007894_260 Hb_005116_010 Hb_005116_010 Hb_000412_060--Hb_005116_010 Hb_000077_330 Hb_000077_330 Hb_000412_060--Hb_000077_330 Hb_001355_110 Hb_001355_110 Hb_001621_020--Hb_001355_110 Hb_001102_270 Hb_001102_270 Hb_001621_020--Hb_001102_270 Hb_162286_030 Hb_162286_030 Hb_001621_020--Hb_162286_030 Hb_001266_020 Hb_001266_020 Hb_001621_020--Hb_001266_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.3371 1.89117 0.591333 0.0940835 0.477028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0361251 0 6.04696 0.81735

CAGE analysis