Hb_000412_110

Information

Type -
Description -
Location Contig412: 308802-313864
Sequence    

Annotation

kegg
ID vvi:100253703
description rac-like GTP-binding protein RAC1
nr
ID AGL44367.1
description Rop4 [Hevea brasiliensis]
swissprot
ID O04369
description Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1
trembl
ID T1RM56
description Rop4 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40801: 308877-313826 , PASA_asmbl_40802: 312520-313383 , PASA_asmbl_40803: 312060-312266
cDNA
(Sanger)
(ID:Location)		 009_F15.ab1: 308900-313215

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000412_110 0.0 - - Rop4 [Hevea brasiliensis]
2 Hb_000676_220 0.0515618899 - - ADP-ribosylation factor, putative [Ricinus communis]
3 Hb_000418_180 0.0683222493 - - conserved hypothetical protein [Ricinus communis]
4 Hb_023386_080 0.077113675 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
5 Hb_000329_040 0.0840691613 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
6 Hb_000041_080 0.0843959832 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
7 Hb_002529_100 0.0866707468 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
8 Hb_003777_180 0.0889948036 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
9 Hb_006775_080 0.0930639178 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
10 Hb_044662_070 0.0968581048 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
11 Hb_011794_070 0.0982451467 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
12 Hb_000634_100 0.0992007935 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
13 Hb_000056_340 0.1001582749 - - 60S ribosomal protein L34A [Hevea brasiliensis]
14 Hb_022250_040 0.1008961796 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
15 Hb_000023_230 0.1011210988 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
16 Hb_000260_080 0.1018469343 - - thioredoxin H-type 1 [Hevea brasiliensis]
17 Hb_004994_170 0.1034698373 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
18 Hb_001776_110 0.1037268621 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
19 Hb_012340_030 0.1043744987 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
20 Hb_000107_390 0.1058113385 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]

Gene co-expression network

sample Hb_000412_110 Hb_000412_110 Hb_000676_220 Hb_000676_220 Hb_000412_110--Hb_000676_220 Hb_000418_180 Hb_000418_180 Hb_000412_110--Hb_000418_180 Hb_023386_080 Hb_023386_080 Hb_000412_110--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000412_110--Hb_000329_040 Hb_000041_080 Hb_000041_080 Hb_000412_110--Hb_000041_080 Hb_002529_100 Hb_002529_100 Hb_000412_110--Hb_002529_100 Hb_000676_220--Hb_000418_180 Hb_004223_130 Hb_004223_130 Hb_000676_220--Hb_004223_130 Hb_006824_020 Hb_006824_020 Hb_000676_220--Hb_006824_020 Hb_000107_390 Hb_000107_390 Hb_000676_220--Hb_000107_390 Hb_001671_080 Hb_001671_080 Hb_000676_220--Hb_001671_080 Hb_007152_020 Hb_007152_020 Hb_000418_180--Hb_007152_020 Hb_000418_180--Hb_000107_390 Hb_000500_130 Hb_000500_130 Hb_000418_180--Hb_000500_130 Hb_000173_170 Hb_000173_170 Hb_000418_180--Hb_000173_170 Hb_002603_100 Hb_002603_100 Hb_023386_080--Hb_002603_100 Hb_023386_080--Hb_000329_040 Hb_000634_100 Hb_000634_100 Hb_023386_080--Hb_000634_100 Hb_044662_070 Hb_044662_070 Hb_023386_080--Hb_044662_070 Hb_000956_010 Hb_000956_010 Hb_023386_080--Hb_000956_010 Hb_000376_050 Hb_000376_050 Hb_023386_080--Hb_000376_050 Hb_000260_080 Hb_000260_080 Hb_000329_040--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000329_040--Hb_011794_070 Hb_000329_040--Hb_000376_050 Hb_000703_140 Hb_000703_140 Hb_000329_040--Hb_000703_140 Hb_004899_320 Hb_004899_320 Hb_000329_040--Hb_004899_320 Hb_000023_230 Hb_000023_230 Hb_000041_080--Hb_000023_230 Hb_000041_080--Hb_002529_100 Hb_003540_040 Hb_003540_040 Hb_000041_080--Hb_003540_040 Hb_002681_020 Hb_002681_020 Hb_000041_080--Hb_002681_020 Hb_000041_080--Hb_000676_220 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_002529_100--Hb_000798_030 Hb_002529_100--Hb_000023_230 Hb_000045_190 Hb_000045_190 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
201.561 38.3577 45.8457 29.9747 112.406 101.255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
189.455 167.026 154.205 29.5985 20.8131

CAGE analysis