Hb_000413_010

Information

Type -
Description -
Location Contig413: 3252-6643
Sequence    

Annotation

kegg
ID pop:POPTR_0011s02160g
description POPTRDRAFT_771231; hypothetical protein
nr
ID KDP20845.1
description hypothetical protein JCGZ_21316 [Jatropha curcas]
swissprot
ID Q9LPZ3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana GN=At1g11410 PE=3 SV=3
trembl
ID A0A067JLG1
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21316 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40911: 3298-3676 , PASA_asmbl_40912: 3853-4310 , PASA_asmbl_40913: 5494-6001 , PASA_asmbl_40914: 5717-6270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_010 0.0 - - hypothetical protein JCGZ_21316 [Jatropha curcas]
2 Hb_001481_120 0.104804152 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
3 Hb_001205_070 0.1099947106 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
4 Hb_001178_140 0.1135327424 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
5 Hb_000859_060 0.1195899344 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
6 Hb_001277_270 0.1200750945 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
7 Hb_001892_020 0.1239241538 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
8 Hb_002961_060 0.126072099 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
9 Hb_008643_200 0.1271458185 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
10 Hb_000905_060 0.1291967381 - - protein with unknown function [Ricinus communis]
11 Hb_000031_060 0.1328607327 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
12 Hb_000179_070 0.1336203435 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
13 Hb_005054_290 0.1338682499 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
14 Hb_001488_070 0.1350333301 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004738_100 0.1353325761 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
16 Hb_000005_080 0.13549662 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
17 Hb_004586_140 0.1373083954 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
18 Hb_000000_460 0.1374587289 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
19 Hb_000343_160 0.1378985105 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
20 Hb_004204_170 0.1381584081 - - synaptosomal associated protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000413_010 Hb_000413_010 Hb_001481_120 Hb_001481_120 Hb_000413_010--Hb_001481_120 Hb_001205_070 Hb_001205_070 Hb_000413_010--Hb_001205_070 Hb_001178_140 Hb_001178_140 Hb_000413_010--Hb_001178_140 Hb_000859_060 Hb_000859_060 Hb_000413_010--Hb_000859_060 Hb_001277_270 Hb_001277_270 Hb_000413_010--Hb_001277_270 Hb_001892_020 Hb_001892_020 Hb_000413_010--Hb_001892_020 Hb_000000_460 Hb_000000_460 Hb_001481_120--Hb_000000_460 Hb_000005_080 Hb_000005_080 Hb_001481_120--Hb_000005_080 Hb_005054_290 Hb_005054_290 Hb_001481_120--Hb_005054_290 Hb_001277_320 Hb_001277_320 Hb_001481_120--Hb_001277_320 Hb_001481_120--Hb_001205_070 Hb_018790_060 Hb_018790_060 Hb_001205_070--Hb_018790_060 Hb_002631_060 Hb_002631_060 Hb_001205_070--Hb_002631_060 Hb_001488_070 Hb_001488_070 Hb_001205_070--Hb_001488_070 Hb_003376_350 Hb_003376_350 Hb_001205_070--Hb_003376_350 Hb_000061_420 Hb_000061_420 Hb_001205_070--Hb_000061_420 Hb_000085_100 Hb_000085_100 Hb_001178_140--Hb_000085_100 Hb_001178_140--Hb_000859_060 Hb_000629_010 Hb_000629_010 Hb_001178_140--Hb_000629_010 Hb_007813_040 Hb_007813_040 Hb_001178_140--Hb_007813_040 Hb_001178_140--Hb_001892_020 Hb_004204_170 Hb_004204_170 Hb_001178_140--Hb_004204_170 Hb_004785_060 Hb_004785_060 Hb_000859_060--Hb_004785_060 Hb_000859_060--Hb_000085_100 Hb_009767_100 Hb_009767_100 Hb_000859_060--Hb_009767_100 Hb_000000_370 Hb_000000_370 Hb_000859_060--Hb_000000_370 Hb_004355_020 Hb_004355_020 Hb_000859_060--Hb_004355_020 Hb_001277_270--Hb_000859_060 Hb_126643_020 Hb_126643_020 Hb_001277_270--Hb_126643_020 Hb_001277_270--Hb_004204_170 Hb_001277_270--Hb_001178_140 Hb_001277_270--Hb_000085_100 Hb_002085_110 Hb_002085_110 Hb_001277_270--Hb_002085_110 Hb_004907_110 Hb_004907_110 Hb_001892_020--Hb_004907_110 Hb_000280_080 Hb_000280_080 Hb_001892_020--Hb_000280_080 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_001892_020--Hb_002631_060 Hb_010883_090 Hb_010883_090 Hb_001892_020--Hb_010883_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.20543 7.74718 3.20604 6.18123 3.6934 5.82363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.22119 6.46911 8.45294 4.81672 0.362488

CAGE analysis