Hb_000413_020

Information

Type -
Description -
Location Contig413: 8896-10009
Sequence    

Annotation

kegg
ID rcu:RCOM_0906840
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012091445.1
description PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
swissprot
ID O81902
description U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1
trembl
ID A0A067JAP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21313 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40915: 8773-10159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_020 0.0 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
2 Hb_026740_020 0.0901444931 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_000193_300 0.1015437476 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
4 Hb_005192_010 0.1032513134 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
5 Hb_003975_010 0.11671567 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
6 Hb_001946_180 0.1173870247 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009252_030 0.120120874 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
8 Hb_001673_060 0.1294196252 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
9 Hb_002344_100 0.1311397421 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
10 Hb_000265_140 0.1322687779 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
11 Hb_009296_080 0.1334902277 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
12 Hb_001801_020 0.1342256072 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
13 Hb_001029_040 0.1350721941 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
14 Hb_001882_020 0.1354229761 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
15 Hb_006469_070 0.1355521121 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
16 Hb_004116_180 0.1357292158 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
17 Hb_023765_010 0.1365717831 - - calcineurin-like phosphoesterase [Manihot esculenta]
18 Hb_000237_050 0.1368799092 - - CP2 [Hevea brasiliensis]
19 Hb_002400_060 0.1369046654 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
20 Hb_000984_310 0.1377429322 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000413_020 Hb_000413_020 Hb_026740_020 Hb_026740_020 Hb_000413_020--Hb_026740_020 Hb_000193_300 Hb_000193_300 Hb_000413_020--Hb_000193_300 Hb_005192_010 Hb_005192_010 Hb_000413_020--Hb_005192_010 Hb_003975_010 Hb_003975_010 Hb_000413_020--Hb_003975_010 Hb_001946_180 Hb_001946_180 Hb_000413_020--Hb_001946_180 Hb_009252_030 Hb_009252_030 Hb_000413_020--Hb_009252_030 Hb_026740_020--Hb_000193_300 Hb_000138_060 Hb_000138_060 Hb_026740_020--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_026740_020--Hb_002289_150 Hb_026740_020--Hb_005192_010 Hb_000265_140 Hb_000265_140 Hb_026740_020--Hb_000265_140 Hb_000193_300--Hb_001946_180 Hb_005977_100 Hb_005977_100 Hb_000193_300--Hb_005977_100 Hb_001347_050 Hb_001347_050 Hb_000193_300--Hb_001347_050 Hb_000085_260 Hb_000085_260 Hb_000193_300--Hb_000085_260 Hb_005192_010--Hb_003975_010 Hb_001029_040 Hb_001029_040 Hb_005192_010--Hb_001029_040 Hb_003746_010 Hb_003746_010 Hb_005192_010--Hb_003746_010 Hb_000300_510 Hb_000300_510 Hb_005192_010--Hb_000300_510 Hb_000922_060 Hb_000922_060 Hb_005192_010--Hb_000922_060 Hb_001754_020 Hb_001754_020 Hb_005192_010--Hb_001754_020 Hb_001691_040 Hb_001691_040 Hb_003975_010--Hb_001691_040 Hb_003975_010--Hb_001754_020 Hb_000912_100 Hb_000912_100 Hb_003975_010--Hb_000912_100 Hb_002046_060 Hb_002046_060 Hb_003975_010--Hb_002046_060 Hb_003975_010--Hb_009252_030 Hb_002289_060 Hb_002289_060 Hb_001946_180--Hb_002289_060 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_001842_010 Hb_001842_010 Hb_001946_180--Hb_001842_010 Hb_000049_020 Hb_000049_020 Hb_001946_180--Hb_000049_020 Hb_138585_080 Hb_138585_080 Hb_001946_180--Hb_138585_080 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_009252_030--Hb_001029_040 Hb_009252_030--Hb_001754_020 Hb_009252_030--Hb_005977_100 Hb_009252_030--Hb_000265_140 Hb_009252_030--Hb_001946_180 Hb_000058_110 Hb_000058_110 Hb_009252_030--Hb_000058_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.04374 14.9632 4.40359 27.2422 4.66711 7.81175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.04574 5.43924 6.01619 6.74612 16.1142

CAGE analysis