Hb_000413_060

Information

Type -
Description -
Location Contig413: 69111-70658
Sequence    

Annotation

kegg
ID rcu:RCOM_0906810
description DAG protein, chloroplast precursor, putative
nr
ID XP_011009500.1
description PREDICTED: DAG protein, chloroplastic [Populus euphratica]
swissprot
ID Q9LPZ1
description Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana GN=MORF9 PE=1 SV=1
trembl
ID B9RXX1
description DAG protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0906810 PE=4 SV=1
Gene Ontology
ID GO:0009570
description dag chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40921: 69120-70671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_060 0.0 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
2 Hb_000163_100 0.0673220792 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
3 Hb_003556_030 0.0735538249 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
4 Hb_000413_240 0.0796904864 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
5 Hb_000390_090 0.0877393465 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
6 Hb_011053_010 0.088971293 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
7 Hb_001541_110 0.0925731131 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_002343_040 0.10100535 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000012_250 0.1024514782 - - hypothetical protein L484_019524 [Morus notabilis]
10 Hb_001105_170 0.1029348221 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
11 Hb_001863_380 0.1070116773 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
12 Hb_009252_060 0.1096920322 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
13 Hb_003077_150 0.1098772669 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
14 Hb_000905_120 0.1104517596 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
15 Hb_012340_090 0.1149875126 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
16 Hb_146255_020 0.1160263915 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
17 Hb_001369_610 0.1160907503 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
18 Hb_000003_780 0.1170279731 - - hexokinase [Manihot esculenta]
19 Hb_000035_240 0.1170923868 - - conserved hypothetical protein [Ricinus communis]
20 Hb_019053_060 0.1183178394 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]

Gene co-expression network

sample Hb_000413_060 Hb_000413_060 Hb_000163_100 Hb_000163_100 Hb_000413_060--Hb_000163_100 Hb_003556_030 Hb_003556_030 Hb_000413_060--Hb_003556_030 Hb_000413_240 Hb_000413_240 Hb_000413_060--Hb_000413_240 Hb_000390_090 Hb_000390_090 Hb_000413_060--Hb_000390_090 Hb_011053_010 Hb_011053_010 Hb_000413_060--Hb_011053_010 Hb_001541_110 Hb_001541_110 Hb_000413_060--Hb_001541_110 Hb_000163_100--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_000163_100--Hb_001863_380 Hb_002946_190 Hb_002946_190 Hb_000163_100--Hb_002946_190 Hb_000012_250 Hb_000012_250 Hb_000163_100--Hb_000012_250 Hb_000429_040 Hb_000429_040 Hb_000163_100--Hb_000429_040 Hb_001329_090 Hb_001329_090 Hb_003556_030--Hb_001329_090 Hb_000905_120 Hb_000905_120 Hb_003556_030--Hb_000905_120 Hb_003556_030--Hb_000413_240 Hb_003556_030--Hb_000390_090 Hb_003077_150 Hb_003077_150 Hb_003556_030--Hb_003077_150 Hb_000413_240--Hb_001863_380 Hb_000413_240--Hb_000390_090 Hb_004041_020 Hb_004041_020 Hb_000413_240--Hb_004041_020 Hb_000413_240--Hb_002946_190 Hb_009252_060 Hb_009252_060 Hb_000390_090--Hb_009252_060 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_000390_090--Hb_011053_010 Hb_006061_040 Hb_006061_040 Hb_011053_010--Hb_006061_040 Hb_011053_010--Hb_000163_100 Hb_002343_040 Hb_002343_040 Hb_011053_010--Hb_002343_040 Hb_146255_020 Hb_146255_020 Hb_011053_010--Hb_146255_020 Hb_007451_040 Hb_007451_040 Hb_001541_110--Hb_007451_040 Hb_000003_780 Hb_000003_780 Hb_001541_110--Hb_000003_780 Hb_001587_180 Hb_001587_180 Hb_001541_110--Hb_001587_180 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8826 11.8596 75.902 19.141 16.4134 17.0827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.8724 48.8683 18.1324 13.919 33.0142

CAGE analysis