Hb_000413_120

Information

Type -
Description -
Location Contig413: 136275-138498
Sequence    

Annotation

kegg
ID rcu:RCOM_0906730
description zinc finger protein, putative
nr
ID XP_012092392.1
description PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
swissprot
ID Q9C5J4
description BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana GN=At3g22104 PE=2 SV=1
trembl
ID B9RXW3
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0906730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_120 0.0 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
2 Hb_002228_120 0.0817391336 - - potassium channel beta, putative [Ricinus communis]
3 Hb_004933_010 0.1005946977 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
4 Hb_015292_020 0.1008297741 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_140627_040 0.1059771525 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
6 Hb_000333_140 0.1131417714 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_009062_020 0.1169993925 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
8 Hb_162472_010 0.1197678125 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001673_090 0.1222888657 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
10 Hb_016911_010 0.1224817831 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
11 Hb_001136_080 0.1226789378 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
12 Hb_009662_040 0.1229119601 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
13 Hb_002783_280 0.1234459071 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
14 Hb_006483_070 0.1255575778 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_009367_070 0.126391524 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
16 Hb_051212_020 0.1267392846 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
17 Hb_000462_070 0.128338591 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
18 Hb_000207_060 0.1289059484 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
19 Hb_000317_380 0.129149496 - - Peroxidase 47 precursor, putative [Ricinus communis]
20 Hb_002902_060 0.1291856885 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]

Gene co-expression network

sample Hb_000413_120 Hb_000413_120 Hb_002228_120 Hb_002228_120 Hb_000413_120--Hb_002228_120 Hb_004933_010 Hb_004933_010 Hb_000413_120--Hb_004933_010 Hb_015292_020 Hb_015292_020 Hb_000413_120--Hb_015292_020 Hb_140627_040 Hb_140627_040 Hb_000413_120--Hb_140627_040 Hb_000333_140 Hb_000333_140 Hb_000413_120--Hb_000333_140 Hb_009062_020 Hb_009062_020 Hb_000413_120--Hb_009062_020 Hb_002228_120--Hb_004933_010 Hb_009662_040 Hb_009662_040 Hb_002228_120--Hb_009662_040 Hb_009367_070 Hb_009367_070 Hb_002228_120--Hb_009367_070 Hb_034713_010 Hb_034713_010 Hb_002228_120--Hb_034713_010 Hb_002228_120--Hb_140627_040 Hb_001635_140 Hb_001635_140 Hb_004933_010--Hb_001635_140 Hb_011628_010 Hb_011628_010 Hb_004933_010--Hb_011628_010 Hb_004933_010--Hb_000333_140 Hb_004933_010--Hb_015292_020 Hb_015292_020--Hb_000333_140 Hb_001709_120 Hb_001709_120 Hb_015292_020--Hb_001709_120 Hb_001025_130 Hb_001025_130 Hb_015292_020--Hb_001025_130 Hb_002902_060 Hb_002902_060 Hb_015292_020--Hb_002902_060 Hb_016911_010 Hb_016911_010 Hb_015292_020--Hb_016911_010 Hb_007122_020 Hb_007122_020 Hb_015292_020--Hb_007122_020 Hb_140627_040--Hb_034713_010 Hb_003680_240 Hb_003680_240 Hb_140627_040--Hb_003680_240 Hb_140627_040--Hb_009367_070 Hb_051212_020 Hb_051212_020 Hb_140627_040--Hb_051212_020 Hb_000207_060 Hb_000207_060 Hb_140627_040--Hb_000207_060 Hb_140627_040--Hb_009062_020 Hb_000333_140--Hb_011628_010 Hb_005211_170 Hb_005211_170 Hb_000333_140--Hb_005211_170 Hb_001136_080 Hb_001136_080 Hb_000333_140--Hb_001136_080 Hb_002307_150 Hb_002307_150 Hb_000333_140--Hb_002307_150 Hb_000310_040 Hb_000310_040 Hb_000333_140--Hb_000310_040 Hb_009062_020--Hb_016911_010 Hb_009062_020--Hb_001136_080 Hb_001775_140 Hb_001775_140 Hb_009062_020--Hb_001775_140 Hb_000934_120 Hb_000934_120 Hb_009062_020--Hb_000934_120 Hb_009062_020--Hb_015292_020 Hb_009062_020--Hb_051212_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0661274 0.229768 2.67415 7.63923 0.0362607 0.049951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0225929 0.127684 0.162171 1.04289

CAGE analysis