Hb_000413_180

Information

Type transcription factor
Description TF Family: GeBP
Location Contig413: 154794-156029
Sequence    

Annotation

kegg
ID rcu:RCOM_0906550
description transcription regulator, putative
nr
ID XP_012077335.1
description PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
swissprot
ID Q9SB42
description Mediator-associated protein 1 OS=Arabidopsis thaliana GN=At4g25210 PE=1 SV=1
trembl
ID A0A067LAY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17238 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40934: 152969-155076 , PASA_asmbl_40936: 157023-157773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_180 0.0 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
2 Hb_010710_010 0.0637661661 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
3 Hb_000230_080 0.0689518537 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
4 Hb_010175_020 0.0789445068 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_003750_080 0.0791629517 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
6 Hb_000152_820 0.0866079571 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
7 Hb_000386_030 0.0866438388 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
8 Hb_001584_160 0.087682785 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
9 Hb_002307_100 0.0888070065 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
10 Hb_002039_010 0.0889859804 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_007757_110 0.0906983692 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
12 Hb_000005_380 0.0926204333 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
13 Hb_000086_590 0.0946313319 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
14 Hb_033152_080 0.0952829643 - - RNA-binding protein Nova-1, putative [Ricinus communis]
15 Hb_007364_010 0.0968137762 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
16 Hb_000776_110 0.0975757205 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
17 Hb_007586_030 0.0993927385 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
18 Hb_000390_070 0.1016407843 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
19 Hb_007943_080 0.1018938948 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
20 Hb_002890_340 0.103133834 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000413_180 Hb_000413_180 Hb_010710_010 Hb_010710_010 Hb_000413_180--Hb_010710_010 Hb_000230_080 Hb_000230_080 Hb_000413_180--Hb_000230_080 Hb_010175_020 Hb_010175_020 Hb_000413_180--Hb_010175_020 Hb_003750_080 Hb_003750_080 Hb_000413_180--Hb_003750_080 Hb_000152_820 Hb_000152_820 Hb_000413_180--Hb_000152_820 Hb_000386_030 Hb_000386_030 Hb_000413_180--Hb_000386_030 Hb_010710_010--Hb_000230_080 Hb_010710_010--Hb_003750_080 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050 Hb_000207_390 Hb_000207_390 Hb_000230_080--Hb_000207_390 Hb_000230_080--Hb_002307_100 Hb_000390_070 Hb_000390_070 Hb_000230_080--Hb_000390_070 Hb_000230_080--Hb_003750_080 Hb_010175_020--Hb_000152_820 Hb_007757_110 Hb_007757_110 Hb_010175_020--Hb_007757_110 Hb_175338_030 Hb_175338_030 Hb_010175_020--Hb_175338_030 Hb_010175_020--Hb_002307_100 Hb_000317_020 Hb_000317_020 Hb_010175_020--Hb_000317_020 Hb_000291_110 Hb_000291_110 Hb_003750_080--Hb_000291_110 Hb_001584_160 Hb_001584_160 Hb_003750_080--Hb_001584_160 Hb_000062_240 Hb_000062_240 Hb_003750_080--Hb_000062_240 Hb_000152_820--Hb_000317_020 Hb_000152_820--Hb_007757_110 Hb_001736_040 Hb_001736_040 Hb_000152_820--Hb_001736_040 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550 Hb_000386_030--Hb_001584_160 Hb_000577_010 Hb_000577_010 Hb_000386_030--Hb_000577_010 Hb_001437_180 Hb_001437_180 Hb_000386_030--Hb_001437_180 Hb_000386_030--Hb_010710_010 Hb_000803_190 Hb_000803_190 Hb_000386_030--Hb_000803_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.8986 54.9547 8.18174 14.2466 89.7066 100.161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.9715 38.3254 104.003 53.5329 28.5465

CAGE analysis